BLASTX nr result
ID: Coptis24_contig00032821
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00032821
(312 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi... 122 4e-26
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera] 122 4e-26
ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 120 1e-25
ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 120 1e-25
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,... 115 3e-24
>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
protein product [Vitis vinifera]
Length = 703
Score = 122 bits (305), Expect = 4e-26
Identities = 67/103 (65%), Positives = 77/103 (74%), Gaps = 3/103 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
Y+ANSLVNLYAKC L +AK FE IQ+KDVVSWNCIINGY+Q G +GSS VM+LFQ
Sbjct: 41 YIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHG--PSGSS-HVMELFQ 97
Query: 189 RMRNENTLPNPFTFAGVFTA---VVNVYEGKQAHCVAIKTGNC 308
RMR ENT PN TFAGVFTA +V+ G+ AH VAIK +C
Sbjct: 98 RMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSC 140
Score = 66.6 bits (161), Expect = 2e-09
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
Y+ +LV++YAKC+ + A+ F+ +Q D+V W +I GY Q NG + + L+
Sbjct: 346 YVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQ-----NGENEDALSLYG 400
Query: 189 RMRNENTLPNPFTFAGVFTA---VVNVYEGKQAHCVAIKTG 302
RM E LPN T A V A + + +GKQ H +K G
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441
Score = 64.3 bits (155), Expect = 1e-08
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ N+LV +YAKC L A FE K+ ++W+ +I GY Q +G S ++LF
Sbjct: 246 VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQ-----SGDSDKALKLFSS 300
Query: 192 MRNENTLPNPFTFAGVFTAVVNV---YEGKQAHCVAIKTG 302
M P+ FTF GV A ++ +EGKQ H +K G
Sbjct: 301 MHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG 340
Score = 63.2 bits (152), Expect = 2e-08
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 DNYLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQL 182
D ++ +SL+N+Y K L +A+ F+ + ++ VSW +I+GY + + + + L
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKL-----AAEALGL 196
Query: 183 FQRMRNENTLPNPFTFAGVFTAVV---NVYEGKQAHCVAIKTG 302
F+ MR E N F F V +A+ V GKQ HC+A+K G
Sbjct: 197 FRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239
Score = 55.5 bits (132), Expect = 4e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ ++L +YAKC L L F + +DV+SWN +I+G +Q NG ++LF+
Sbjct: 448 IGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQ-----NGCGKEALELFEE 502
Query: 192 MRNENTLPNPFTFAGVFTA 248
M+ E T P+ TF + +A
Sbjct: 503 MQLEGTKPDYVTFVNILSA 521
>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 122 bits (305), Expect = 4e-26
Identities = 67/103 (65%), Positives = 77/103 (74%), Gaps = 3/103 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
Y+ANSLVNLYAKC L +AK FE IQ+KDVVSWNCIINGY+Q G +GSS VM+LFQ
Sbjct: 41 YIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHG--PSGSS-HVMELFQ 97
Query: 189 RMRNENTLPNPFTFAGVFTA---VVNVYEGKQAHCVAIKTGNC 308
RMR ENT PN TFAGVFTA +V+ G+ AH VAIK +C
Sbjct: 98 RMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSC 140
Score = 66.6 bits (161), Expect = 2e-09
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
Y+ +LV++YAKC+ + A+ F+ +Q D+V W +I GY Q NG + + L+
Sbjct: 346 YVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQ-----NGENEDALSLYG 400
Query: 189 RMRNENTLPNPFTFAGVFTA---VVNVYEGKQAHCVAIKTG 302
RM E LPN T A V A + + +GKQ H +K G
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441
Score = 63.2 bits (152), Expect = 2e-08
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 DNYLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQL 182
D ++ +SL+N+Y K L +A+ F+ + ++ VSW +I+GY + + + + L
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKL-----AAEALGL 196
Query: 183 FQRMRNENTLPNPFTFAGVFTAVV---NVYEGKQAHCVAIKTG 302
F+ MR E N F F V +A+ V GKQ HC+A+K G
Sbjct: 197 FRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239
Score = 61.2 bits (147), Expect = 8e-08
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ N+LV +YAKC L A FE K+ ++W+ +I G Q +G S ++LF
Sbjct: 246 VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQ-----SGDSDKALKLFSS 300
Query: 192 MRNENTLPNPFTFAGVFTAVVNV---YEGKQAHCVAIKTG 302
M P+ FTF GV A ++ +EGKQ H +K G
Sbjct: 301 MHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG 340
Score = 55.5 bits (132), Expect = 4e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ ++L +YAKC L L F + +DV+SWN +I+G +Q NG ++LF+
Sbjct: 448 IGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQ-----NGCGKEALELFEE 502
Query: 192 MRNENTLPNPFTFAGVFTA 248
M+ E T P+ TF + +A
Sbjct: 503 MQLEGTKPDYVTFVNILSA 521
>ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 120 bits (300), Expect = 1e-25
Identities = 63/102 (61%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
YL NSLVNLYAKC + +AKL FE I +KDVVSWNC+INGY+QKG VM+LFQ
Sbjct: 46 YLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKG---TVGYSFVMELFQ 102
Query: 189 RMRNENTLPNPFTFAGVFTAVVN---VYEGKQAHCVAIKTGN 305
RMR ENTLPN TF+GVFTA + + G QAH +AIKT N
Sbjct: 103 RMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSN 144
Score = 64.3 bits (155), Expect = 1e-08
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
Y +LV++YAKC L A+ F+ ++ D+V W +I+GY Q NG + + L+
Sbjct: 351 YFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQ-----NGENETALTLYC 405
Query: 189 RMRNENTLPNPFTFAGVFTA---VVNVYEGKQAHCVAIKTG 302
RM+ E +P+ T A V A + + +GKQ H IK G
Sbjct: 406 RMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYG 446
Score = 62.0 bits (149), Expect = 5e-08
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ N+LV +Y KC L A FE KD ++W+ +I GY Q G S + LF
Sbjct: 251 VGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQA-----GDSHEALNLFYN 305
Query: 192 MRNENTLPNPFTFAGVFTAVVNV---YEGKQAHCVAIKTG 302
M P+ FTF GV A ++ EGKQ H ++K G
Sbjct: 306 MHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 DNYLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQL 182
D ++ +SL+N+Y K + A+ F+ I ++ VSW II+GY + + +L
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFE-----AWEL 201
Query: 183 FQRMRNENTLPNPFTFAGVFTAVV---NVYEGKQAHCVAIKTG 302
F MR E + F + V +A+ V+ GKQ HC+A+K G
Sbjct: 202 FXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244
Score = 54.7 bits (130), Expect = 8e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ ++L +YAKC L L F + +D+++WN +I+G +Q NG ++LF+
Sbjct: 453 IGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQ-----NGEGLKALELFEE 507
Query: 192 MRNENTLPNPFTFAGVFTA 248
+R+ T P+ TF V +A
Sbjct: 508 LRHGTTKPDYVTFVNVLSA 526
>ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 692
Score = 120 bits (300), Expect = 1e-25
Identities = 63/102 (61%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
YL NSLVNLYAKC + +AKL FE I +KDVVSWNC+INGY+QKG VM+LFQ
Sbjct: 46 YLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKG---TVGYSFVMELFQ 102
Query: 189 RMRNENTLPNPFTFAGVFTAVVN---VYEGKQAHCVAIKTGN 305
RMR ENTLPN TF+GVFTA + + G QAH +AIKT N
Sbjct: 103 RMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSN 144
Score = 61.6 bits (148), Expect = 6e-08
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ N+LV +Y KC L A FE KD ++W+ +I GY Q G S + LF
Sbjct: 251 VGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQA-----GDSHEALNLFYN 305
Query: 192 MRNENTLPNPFTFAGVFTAVVNV---YEGKQAHCVAIKTG 302
M P+ FTF GV A ++ EGKQ H ++K G
Sbjct: 306 MHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 DNYLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQL 182
D ++ +SL+N+Y K + A+ F+ I ++ VSW II+GY + + +L
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFE-----AWEL 201
Query: 183 FQRMRNENTLPNPFTFAGVFTAVV---NVYEGKQAHCVAIKTG 302
F MR E + F + V +A+ V+ GKQ HC+A+K G
Sbjct: 202 FLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244
Score = 54.7 bits (130), Expect = 8e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ ++L +YAKC L L F + +D+++WN +I+G +Q NG ++LF+
Sbjct: 435 IGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQ-----NGEGLKALELFEE 489
Query: 192 MRNENTLPNPFTFAGVFTA 248
+R+ T P+ TF V +A
Sbjct: 490 LRHGTTKPDYVTFVNVLSA 508
>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 115 bits (289), Expect = 3e-24
Identities = 60/99 (60%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
YLANSL+N YAKC L +AKL F+ I +KDV+SWNC+INGY+Q+G GSS VM+LFQ
Sbjct: 44 YLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQG--PTGSS-FVMELFQ 100
Query: 189 RMRNENTLPNPFTFAGVFTAVVN---VYEGKQAHCVAIK 296
RMR +N LPN TF+G+FTA N ++ G+QAH VAIK
Sbjct: 101 RMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIK 139
Score = 62.0 bits (149), Expect = 5e-08
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 DNYLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQL 182
D ++ +SL+N+Y K LL +A+ F+ + ++ V+W +I+GY + + ++
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYA-----IQRLAGEAFEV 199
Query: 183 FQRMRNENTLPNPFTFAGVFTAVV---NVYEGKQAHCVAIKTG 302
F+ MR E N F F V +A+ V GKQ HC+A+KTG
Sbjct: 200 FELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTG 242
Score = 61.2 bits (147), Expect = 8e-08
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ N+LV +YAKC L + FE K+ ++W+ +I GY Q +G S ++LF R
Sbjct: 249 ILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQ-----SGDSHKALKLFSR 303
Query: 192 MRNENTLPNPFTFAGVFTAVVN---VYEGKQAHCVAIKTG 302
M P+ FT GV A + V EGKQ H +K G
Sbjct: 304 MHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLG 343
Score = 60.8 bits (146), Expect = 1e-07
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 9 YLANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQ 188
Y+ +LV++YAK + A+ F +Q D+V W +I GY Q NG + + L+
Sbjct: 349 YIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQ-----NGENEDALSLYC 403
Query: 189 RMRNENTLPNPFTFAGVFTAVVNVY---EGKQAHCVAIKTG 302
RM+ E LPN T A V A N+ +G+Q H IK G
Sbjct: 404 RMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYG 444
Score = 58.2 bits (139), Expect = 7e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Frame = +3
Query: 12 LANSLVNLYAKCNLLTQAKLQFEEIQHKDVVSWNCIINGYTQKGIHVNGSSCLVMQLFQR 191
+ ++L +YAKC L + + F + +D++SWN +I+G +Q NG ++LF+
Sbjct: 451 IGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQ-----NGYGKEALELFEE 505
Query: 192 MRNENTLPNPFTFAGVFTA 248
MR ++T P+ TF V +A
Sbjct: 506 MRQQDTKPDDVTFVNVLSA 524