BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032790
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   218   4e-55
emb|CBI38215.3| unnamed protein product [Vitis vinifera]              164   9e-39
ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containi...   164   9e-39
gb|AEP33762.1| organelle transcript processing 82, partial [Hesp...   162   2e-38
gb|AEP33771.1| organelle transcript processing 82, partial [Thla...   159   2e-37

>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  218 bits (555), Expect = 4e-55
 Identities = 98/157 (62%), Positives = 131/157 (83%)
 Frame = -3

Query: 474 RQFNRMKKEFGIIPKIEHYGCMVDILGRTGLIHEAKDLIRSMPMDPNIVVLGAFLSACKL 295
           ++FN+M KEF I PK+EHYGCMVDIL R GLI+EAK++IR+MP++PN+V+ GA L+ACK+
Sbjct: 411 KKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKV 470

Query: 294 HGFTTVGDDVMRHLQNLAPEDGGCYVLLSNIYADVNQWDKVVEMRKMMKGMRVEKKIPGC 115
           HG+T VG+DV+ ++Q L  EDGGCYVLLSNI+A  +QW++V + RKMMK M VEKKIPG 
Sbjct: 471 HGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGY 530

Query: 114 SFIEVNSVVHEFLVDDKLHPNWRELCVIIDRLSTHLE 4
           S IE++SVVH+F  +D+LH  WRE+  +I+RL+THLE
Sbjct: 531 SSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLE 567


>emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  164 bits (414), Expect = 9e-39
 Identities = 73/158 (46%), Positives = 110/158 (69%)
 Frame = -3

Query: 477 RRQFNRMKKEFGIIPKIEHYGCMVDILGRTGLIHEAKDLIRSMPMDPNIVVLGAFLSACK 298
           R+ F  M   + + P++EHYGCMVD+LGR GLI+EA++ IR+MP++P+  VLGA L ACK
Sbjct: 427 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACK 486

Query: 297 LHGFTTVGDDVMRHLQNLAPEDGGCYVLLSNIYADVNQWDKVVEMRKMMKGMRVEKKIPG 118
           +HG   +G+ VM+ ++ + P   G YVL+SNIY+  N+W   +++RK MK   +E K PG
Sbjct: 487 IHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE-KTPG 545

Query: 117 CSFIEVNSVVHEFLVDDKLHPNWRELCVIIDRLSTHLE 4
           CS IE++ V+HEF   DK HP  +E+  ++D + +HL+
Sbjct: 546 CSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583


>ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  164 bits (414), Expect = 9e-39
 Identities = 73/158 (46%), Positives = 110/158 (69%)
 Frame = -3

Query: 477 RRQFNRMKKEFGIIPKIEHYGCMVDILGRTGLIHEAKDLIRSMPMDPNIVVLGAFLSACK 298
           R+ F  M   + + P++EHYGCMVD+LGR GLI+EA++ IR+MP++P+  VLGA L ACK
Sbjct: 449 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACK 508

Query: 297 LHGFTTVGDDVMRHLQNLAPEDGGCYVLLSNIYADVNQWDKVVEMRKMMKGMRVEKKIPG 118
           +HG   +G+ VM+ ++ + P   G YVL+SNIY+  N+W   +++RK MK   +E K PG
Sbjct: 509 IHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE-KTPG 567

Query: 117 CSFIEVNSVVHEFLVDDKLHPNWRELCVIIDRLSTHLE 4
           CS IE++ V+HEF   DK HP  +E+  ++D + +HL+
Sbjct: 568 CSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 605


>gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  162 bits (411), Expect = 2e-38
 Identities = 71/158 (44%), Positives = 112/158 (70%)
 Frame = -3

Query: 477 RRQFNRMKKEFGIIPKIEHYGCMVDILGRTGLIHEAKDLIRSMPMDPNIVVLGAFLSACK 298
           R  F  M++++ I PK+EHYGCM+D+LG +GL  EA+++I +MPM+P+ V+  + L ACK
Sbjct: 434 RNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACK 493

Query: 297 LHGFTTVGDDVMRHLQNLAPEDGGCYVLLSNIYADVNQWDKVVEMRKMMKGMRVEKKIPG 118
           +HG   +G+   + L  + PE+ G YVLLSNIYA   +W++V ++R ++    ++KK+PG
Sbjct: 494 IHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPG 553

Query: 117 CSFIEVNSVVHEFLVDDKLHPNWRELCVIIDRLSTHLE 4
           CS IE++SVVHEF++ DKLHP  RE+  +++ +   LE
Sbjct: 554 CSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLE 591


>gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  159 bits (403), Expect = 2e-37
 Identities = 73/158 (46%), Positives = 110/158 (69%)
 Frame = -3

Query: 477 RRQFNRMKKEFGIIPKIEHYGCMVDILGRTGLIHEAKDLIRSMPMDPNIVVLGAFLSACK 298
           R  F  M +++ I PK+EHYGCM+D+LG +GL  EAK++I++MPM+P+ V+  + L AC+
Sbjct: 422 RHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACR 481

Query: 297 LHGFTTVGDDVMRHLQNLAPEDGGCYVLLSNIYADVNQWDKVVEMRKMMKGMRVEKKIPG 118
            HG   + +   R+L  + PE+ G YVLLSNIYA   +WD+V ++R ++ G  + KK+PG
Sbjct: 482 RHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGM-KKVPG 540

Query: 117 CSFIEVNSVVHEFLVDDKLHPNWRELCVIIDRLSTHLE 4
           CS IE++S VHEF+V DKLHP  RE+  +++ +   LE
Sbjct: 541 CSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLE 578