BLASTX nr result
ID: Coptis24_contig00032757
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00032757
(469 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi... 194 6e-48
ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containi... 194 6e-48
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi... 187 8e-46
ref|XP_003604235.1| Pentatricopeptide repeat-containing protein ... 183 1e-44
ref|XP_002325518.1| predicted protein [Populus trichocarpa] gi|2... 183 1e-44
>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 716
Score = 194 bits (493), Expect = 6e-48
Identities = 94/149 (63%), Positives = 120/149 (80%), Gaps = 1/149 (0%)
Frame = +1
Query: 25 KIQTKPPPNSKRPIFIKKKQTSKFPS-KTQKFSQKDAFPQSLPLHKKNPSSIYKDIQNFA 201
K T PP+ K K SKF + K F++KDAFP SLPLH KNP +IY+D+Q FA
Sbjct: 38 KSTTDTPPS-------KIKIVSKFRNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFA 90
Query: 202 RENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDNNEF 381
R+NKLKEALTI+DY++++GIPVN TTFSSL+ ACVRTKS+ Y KQ+H HIRINGL+NNEF
Sbjct: 91 RQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEF 150
Query: 382 LRTRLVHMYSSCGSMEDAEKVFDELSTRS 468
+RTRLVHMY++CGS+E+A+K+FDE S++S
Sbjct: 151 IRTRLVHMYTACGSLEEAQKLFDESSSKS 179
>ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 696
Score = 194 bits (493), Expect = 6e-48
Identities = 94/149 (63%), Positives = 120/149 (80%), Gaps = 1/149 (0%)
Frame = +1
Query: 25 KIQTKPPPNSKRPIFIKKKQTSKFPS-KTQKFSQKDAFPQSLPLHKKNPSSIYKDIQNFA 201
K T PP+ K K SKF + K F++KDAFP SLPLH KNP +IY+D+Q FA
Sbjct: 38 KSTTDTPPS-------KIKIVSKFRNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFA 90
Query: 202 RENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDNNEF 381
R+NKLKEALTI+DY++++GIPVN TTFSSL+ ACVRTKS+ Y KQ+H HIRINGL+NNEF
Sbjct: 91 RQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEF 150
Query: 382 LRTRLVHMYSSCGSMEDAEKVFDELSTRS 468
+RTRLVHMY++CGS+E+A+K+FDE S++S
Sbjct: 151 IRTRLVHMYTACGSLEEAQKLFDESSSKS 179
>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Vitis vinifera]
Length = 725
Score = 187 bits (475), Expect = 8e-46
Identities = 95/155 (61%), Positives = 116/155 (74%), Gaps = 13/155 (8%)
Frame = +1
Query: 43 PPNSKRP--IFIKKKQTSKFPSKTQ-----------KFSQKDAFPQSLPLHKKNPSSIYK 183
P SK P I+ + T P++TQ FS+KDAFP SLPLH KNP +I+
Sbjct: 62 PLQSKNPHAIYSDNQTTPSRPTQTQFRTRLKSPKKKPFSEKDAFPMSLPLHTKNPHAIFS 121
Query: 184 DIQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRING 363
DIQ FAR+ KLKEALTILDY +++GIPVN TTFSSLL ACV +KSL +GKQ+H HIRING
Sbjct: 122 DIQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVHIRING 181
Query: 364 LDNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTRS 468
L+NNEFLRT+LVHMY+SCGS+EDA VFD +S++S
Sbjct: 182 LENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSKS 216
Score = 58.9 bits (141), Expect = 4e-07
Identities = 26/94 (27%), Positives = 54/94 (57%)
Frame = +1
Query: 187 IQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGL 366
+ + +L +AL + ++++EG + T +++L C ++L GK++H++ NG
Sbjct: 429 MSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGF 488
Query: 367 DNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTRS 468
N + T L+ MYS CG+++ + K+FD + R+
Sbjct: 489 LPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARN 522
>ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505290|gb|AES86432.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 688
Score = 183 bits (465), Expect = 1e-44
Identities = 94/152 (61%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Frame = +1
Query: 16 PSSKIQTKPPPNSKRPIF-IKKKQTSKFPSKTQKFSQKDAFPQSLPLHKKNPSSIYKDIQ 192
PSS +T K+P F I K +K + + FS++DAFP SLPLH KNP SIYKDI+
Sbjct: 27 PSSSFKTTH--QRKKPKFTIPNKNNNKNNNVKKPFSEEDAFPCSLPLHNKNPISIYKDIK 84
Query: 193 NFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDN 372
NFAR+NKL EAL ILDY+++ GIPVN TTFSSL+ AC+RT SL GKQ+HTHIRINGL+
Sbjct: 85 NFARQNKLNEALAILDYVDQNGIPVNATTFSSLIAACIRTNSLSIGKQIHTHIRINGLEK 144
Query: 373 NEFLRTRLVHMYSSCGSMEDAEKVFDELSTRS 468
N FL T+LV MY+SCGS+EDA K+FDEL S
Sbjct: 145 NTFLLTKLVQMYTSCGSLEDALKLFDELPDES 176
>ref|XP_002325518.1| predicted protein [Populus trichocarpa] gi|222862393|gb|EEE99899.1|
predicted protein [Populus trichocarpa]
Length = 678
Score = 183 bits (464), Expect = 1e-44
Identities = 90/164 (54%), Positives = 119/164 (72%), Gaps = 14/164 (8%)
Frame = +1
Query: 13 SPSSKIQTKPPPNSKRPIFIKKKQTSKFPSKTQ--------------KFSQKDAFPQSLP 150
SPS + P + I I +Q SK S TQ +F ++DAFP SLP
Sbjct: 3 SPSLSVHLHCFPQNPLNINITHRQFSKIKSSTQTQPVQTQNPNKKHQQFDERDAFPASLP 62
Query: 151 LHKKNPSSIYKDIQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYG 330
LHKKNP +IYKDIQ F+R+N+LK+AL I+DY++++GIPVN TTFS+L+ AC+R+KSL
Sbjct: 63 LHKKNPQAIYKDIQRFSRKNQLKDALIIMDYMDQQGIPVNPTTFSALIAACIRSKSLTKA 122
Query: 331 KQVHTHIRINGLDNNEFLRTRLVHMYSSCGSMEDAEKVFDELST 462
K++HTH+RINGL NNEFLRT+LVHMY+SCGS+EDA+ VFDE ++
Sbjct: 123 KEIHTHLRINGLQNNEFLRTKLVHMYTSCGSIEDAKSVFDECTS 166
Score = 57.0 bits (136), Expect = 2e-06
Identities = 25/93 (26%), Positives = 50/93 (53%)
Frame = +1
Query: 187 IQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGL 366
I ++ + EA + +++ ++ T + +L+ C + K+L +GK++H HI
Sbjct: 483 IDSYVENGCINEAFNVFRFMQWSKHRPDSVTMARMLSICSKIKTLKFGKEIHGHILKKDF 542
Query: 367 DNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTR 465
++ F+ + LV MY SCG + AE VF+ + +
Sbjct: 543 ESIPFVSSELVKMYGSCGLVHSAESVFNAVPVK 575