BLASTX nr result
ID: Coptis24_contig00032728
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00032728
(283 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
ref|XP_002522705.1| pentatricopeptide repeat-containing protein,... 139 2e-31
ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|2... 136 2e-30
ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containi... 131 6e-29
ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containi... 131 6e-29
>ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed
protein product [Vitis vinifera]
Length = 742
Score = 144 bits (362), Expect = 1e-32
Identities = 67/94 (71%), Positives = 83/94 (88%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+ FDQ+E+PNV++WNAMISGYAKNG +EA+ LF+ MI KN R DSITVRSAI+ACAQ
Sbjct: 324 ARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQ 383
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+GSLDLA+WM +YIN++EYRND+ VNTALIDM+A
Sbjct: 384 VGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFA 417
Score = 65.9 bits (159), Expect = 3e-09
Identities = 30/94 (31%), Positives = 54/94 (57%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+ +FD+ P+V LWNA+I GY+ + +AIE++ RM PD T+ + AC+
Sbjct: 122 ARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSG 181
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+ L++ + ++ I R + +D+ V L+ +YA
Sbjct: 182 VPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYA 215
Score = 54.3 bits (129), Expect = 1e-05
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+++F+ ++ N++ W +MISGY +NG EA+ +F +M +N +PD I + S + A
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTD 282
Query: 181 IGSLDLARWMYNYINRS--EYRNDILVNTALIDMYA 282
+ L+ + ++ + + E+ D+L+ +L MYA
Sbjct: 283 VEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAMYA 316
>ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538055|gb|EEF39667.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 501
Score = 139 bits (351), Expect = 2e-31
Identities = 65/94 (69%), Positives = 81/94 (86%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+L FDQ+ +PN+ILWNAMISGYAKNG A+EA+ELFRRMI N PDSIT+ S I+ACAQ
Sbjct: 300 ARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACAQ 359
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+GSL+LARWM +YI RSE+RND V++ALIDM++
Sbjct: 360 MGSLELARWMSDYIGRSEFRNDAFVSSALIDMFS 393
Score = 54.7 bits (130), Expect = 8e-06
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIAC-A 177
A+ +FD P+V LWNA+I Y + AIE++ RM + RPD T + AC A
Sbjct: 97 ARNVFDYYPDPDVFLWNAIIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTA 156
Query: 178 QIGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+ LD+ R ++ R D+ V L+ YA
Sbjct: 157 SLAFLDIGRRVHGQAFRHGLEADVFVQNGLVTFYA 191
>ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|222858326|gb|EEE95873.1|
predicted protein [Populus trichocarpa]
Length = 746
Score = 136 bits (342), Expect = 2e-30
Identities = 66/94 (70%), Positives = 79/94 (84%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+L F+Q+E P++I WNAMISGY KNG A+EAIELFR M KN RPDSITV S+I ACAQ
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQ 387
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
IGSL+LARWM YI+ SE+RND++VNT+LID YA
Sbjct: 388 IGSLELARWMDEYISMSEFRNDVIVNTSLIDTYA 421
Score = 64.3 bits (155), Expect = 1e-08
Identities = 30/94 (31%), Positives = 55/94 (58%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+ LFD+ P+V LWNA++ Y+++G AIE++ RM + PD + + AC+
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSA 185
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+ +L++ R ++ I R + +D+ V L+ +YA
Sbjct: 186 LPALEMGRRVHGQIFRHGFESDVFVQNGLVALYA 219
>ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 131 bits (329), Expect = 6e-29
Identities = 62/94 (65%), Positives = 78/94 (82%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+ F+++E PN+ILWNAMISGYA NG +EAI+LFR MI KN R DSIT+RSA++A AQ
Sbjct: 240 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 299
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+GSL+LARW+ YI++SEYR+D VNT LIDMYA
Sbjct: 300 VGSLELARWLDGYISKSEYRDDTFVNTGLIDMYA 333
>ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 131 bits (329), Expect = 6e-29
Identities = 62/94 (65%), Positives = 78/94 (82%)
Frame = +1
Query: 1 AKLLFDQIEMPNVILWNAMISGYAKNGNADEAIELFRRMILKNGRPDSITVRSAIIACAQ 180
A+ F+++E PN+ILWNAMISGYA NG +EAI+LFR MI KN R DSIT+RSA++A AQ
Sbjct: 255 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 314
Query: 181 IGSLDLARWMYNYINRSEYRNDILVNTALIDMYA 282
+GSL+LARW+ YI++SEYR+D VNT LIDMYA
Sbjct: 315 VGSLELARWLDGYISKSEYRDDTFVNTGLIDMYA 348