BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032663
         (614 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33742.3| unnamed protein product [Vitis vinifera]              324   7e-87
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi...   324   7e-87
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]   321   7e-86
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi...   305   4e-81
ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|2...   298   5e-79

>emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  324 bits (831), Expect = 7e-87
 Identities = 155/203 (76%), Positives = 178/203 (87%)
 Frame = -3

Query: 612 DVVSARQLFDTMPEKSVVSLTAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQ 433
           DVVSA+QLFDTMPEKS+VSLTAM+TCY KHG +D ARV+F+ M+ERD VCWNVMIDGYTQ
Sbjct: 108 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 167

Query: 432 HARPSESLGLFRKMLSAKLKPNEITVLSVLSACGQLGALESGKWMHSYLKNNGIQINVHV 253
           +  P+E+L LFR+ML AK KPNE+TVLSVLSACGQLGALESG+W+HSY++NNGIQ NVHV
Sbjct: 168 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 227

Query: 252 GTALVDMYCKSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRL 73
           GTALVDMY K GSLEDARLVFD I DKDVVAWNSMIVGYAMHG SQ+AL+LF  M  + L
Sbjct: 228 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGL 287

Query: 72  QPTDITFIGVLSACSHAGLVVDG 4
            PT+ITFIG+LSAC H+G V +G
Sbjct: 288 HPTNITFIGILSACGHSGWVTEG 310



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 37/83 (44%), Positives = 54/83 (65%)
 Frame = -3

Query: 249 TALVDMYCKSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRLQ 70
           TA++  Y K G L+ AR++FDG++++D V WN MI GY  +G   +AL LF RML  + +
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 69  PTDITFIGVLSACSHAGLVVDGR 1
           P ++T + VLSAC   G +  GR
Sbjct: 188 PNEVTVLSVLSACGQLGALESGR 210


>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  324 bits (831), Expect = 7e-87
 Identities = 155/203 (76%), Positives = 178/203 (87%)
 Frame = -3

Query: 612 DVVSARQLFDTMPEKSVVSLTAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQ 433
           DVVSA+QLFDTMPEKS+VSLTAM+TCY KHG +D ARV+F+ M+ERD VCWNVMIDGYTQ
Sbjct: 174 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 233

Query: 432 HARPSESLGLFRKMLSAKLKPNEITVLSVLSACGQLGALESGKWMHSYLKNNGIQINVHV 253
           +  P+E+L LFR+ML AK KPNE+TVLSVLSACGQLGALESG+W+HSY++NNGIQ NVHV
Sbjct: 234 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 293

Query: 252 GTALVDMYCKSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRL 73
           GTALVDMY K GSLEDARLVFD I DKDVVAWNSMIVGYAMHG SQ+AL+LF  M  + L
Sbjct: 294 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGL 353

Query: 72  QPTDITFIGVLSACSHAGLVVDG 4
            PT+ITFIG+LSAC H+G V +G
Sbjct: 354 HPTNITFIGILSACGHSGWVTEG 376



 Score =  107 bits (266), Expect = 2e-21
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
 Frame = -3

Query: 534 YVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQHARPSESLGLFRKMLSAKLKPNEITV 355
           Y   G +D +  +F       V  W  +I G+       ++L  + +ML+  ++PN  T 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 354 LSVLSACGQLGALESGKWMHSYLKNNGIQINVHVGTALVDMYC----------------- 226
            S+L  C     +E GK +HS     G   +++V T L+D+Y                  
Sbjct: 132 SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187

Query: 225 --------------KSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRM 88
                         K G L+ AR++FDG++++D V WN MI GY  +G   +AL LF RM
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247

Query: 87  LALRLQPTDITFIGVLSACSHAGLVVDGR 1
           L  + +P ++T + VLSAC   G +  GR
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESGR 276


>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  321 bits (822), Expect = 7e-86
 Identities = 154/203 (75%), Positives = 177/203 (87%)
 Frame = -3

Query: 612 DVVSARQLFDTMPEKSVVSLTAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQ 433
           DVVSA+QLFDTMPEKS+VSLTAM+TCY KHG +D ARV+F+ M+ERD VCWNVMIDGYTQ
Sbjct: 121 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 180

Query: 432 HARPSESLGLFRKMLSAKLKPNEITVLSVLSACGQLGALESGKWMHSYLKNNGIQINVHV 253
           +  P+E+L LFR+ML AK KPNE+TVLSVLSACGQLGALESG+W+HSY++NNGIQ NVHV
Sbjct: 181 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 240

Query: 252 GTALVDMYCKSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRL 73
           GTALVDMY K GSLEDARLVFD I DKDVVAWNSMIVGYAM G SQ+AL+LF  M  + L
Sbjct: 241 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGL 300

Query: 72  QPTDITFIGVLSACSHAGLVVDG 4
            PT+ITFIG+LSAC H+G V +G
Sbjct: 301 HPTNITFIGILSACGHSGWVTEG 323



 Score =  107 bits (268), Expect = 1e-21
 Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
 Frame = -3

Query: 561 VSLTAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQHARPSESLGLFRKMLSA 382
           V L  +   Y   G +D +  +F       V  W  +I G+       ++L  + +ML+ 
Sbjct: 10  VPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQ 69

Query: 381 KLKPNEITVLSVLSACGQLGALESGKWMHSYLKNNGIQINVHVGTALVDMYC-------- 226
            ++PN  T  S+L  C     +E GK +HS     G   +++V T L+D+Y         
Sbjct: 70  GVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 125

Query: 225 -----------------------KSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQ 115
                                  K G L+ AR++FDG++++D V WN MI GY  +G   
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 185

Query: 114 DALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGR 1
           +AL LF RML  + +P ++T + VLSAC   G +  GR
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 223


>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
           gi|449513125|ref|XP_004164238.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  305 bits (781), Expect = 4e-81
 Identities = 149/204 (73%), Positives = 169/204 (82%)
 Frame = -3

Query: 612 DVVSARQLFDTMPEKSVVSLTAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQ 433
           DVV ARQLFD MPE+S+VSLT M+TCY K G +D+AR +F  M ERDVVCWNVMI GY Q
Sbjct: 191 DVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQ 250

Query: 432 HARPSESLGLFRKMLSAKLKPNEITVLSVLSACGQLGALESGKWMHSYLKNNGIQINVHV 253
              P+ESL LFR+ML AK  PNE+TVL+VLSACGQLGALESG+W+HSY++N GIQINVHV
Sbjct: 251 SGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHV 310

Query: 252 GTALVDMYCKSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRL 73
           GTAL+DMY K GSLEDARLVFD I+DKDVVAWNSMIVGYAMHG SQ AL+LF  M     
Sbjct: 311 GTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGH 370

Query: 72  QPTDITFIGVLSACSHAGLVVDGR 1
           +PTDITFIG+LSAC H GLV +GR
Sbjct: 371 KPTDITFIGILSACGHGGLVEEGR 394



 Score =  115 bits (288), Expect = 6e-24
 Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 31/209 (14%)
 Frame = -3

Query: 534 YVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQHARPSESLGLFRKMLSAKLKPNEITV 355
           Y   G +D +  +FN+ DE +V  ++ +I  + Q      + G + +MLS  ++PN  T 
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 354 LSVLSACGQLGALESGKWMHSYLKNNGIQINVHVGTALVDMYC----------------- 226
            SVL +C    +LESGK +H      G+  +++V T LVD+Y                  
Sbjct: 149 SSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204

Query: 225 --------------KSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRM 88
                         K G L+ AR +F+G+K++DVV WN MI GYA  G   ++L+LF RM
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264

Query: 87  LALRLQPTDITFIGVLSACSHAGLVVDGR 1
           L  +  P ++T + VLSAC   G +  GR
Sbjct: 265 LVAKAIPNEVTVLAVLSACGQLGALESGR 293


>ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|222831850|gb|EEE70327.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  298 bits (763), Expect = 5e-79
 Identities = 139/192 (72%), Positives = 167/192 (86%)
 Frame = -3

Query: 579 MPEKSVVSLTAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQHARPSESLGLF 400
           MPEKS+VSLTAMITCY K+G +DEARV+F+ ++ERD +CWNVMIDGY QH  P+E L LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 399 RKMLSAKLKPNEITVLSVLSACGQLGALESGKWMHSYLKNNGIQINVHVGTALVDMYCKS 220
           R+ML+AK++PNE+TVL+VLSACGQ GALE+G+W+HSY++NNGI INV VGT+L+DMY K 
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 219 GSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRLQPTDITFIGVL 40
           GSLEDARLVF+ I +KDVVAWNSM+VGYAMHG SQDAL LF  M  +  QPTDITFIGVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 39  SACSHAGLVVDG 4
           +ACSHAGLV +G
Sbjct: 181 NACSHAGLVSEG 192



 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 48/146 (32%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
 Frame = -3

Query: 552 TAMITCYVKHGNVDEARVIFNSMDERDVVCWNVMIDGYTQHARPSESLGLFRKMLSAKLK 373
           T++I  Y K G++++AR++F  +  +DVV WN M+ GY  H    ++L LF++M     +
Sbjct: 111 TSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQ 170

Query: 372 PNEITVLSVLSACGQLGALESG-KWMHSYLKNNGIQINVHVGTALVDMYCKSGSLEDA-R 199
           P +IT + VL+AC   G +  G K+ +S     GI+  V     +V++  ++G LE+A  
Sbjct: 171 PTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYE 230

Query: 198 LVFDGIKDKDVVAWNSMIVGYAMHGH 121
           LV +   D+D V W +++    +HG+
Sbjct: 231 LVKNMEIDQDPVLWGTLLGACRLHGN 256



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 35/83 (42%), Positives = 56/83 (67%)
 Frame = -3

Query: 249 TALVDMYCKSGSLEDARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLALRLQ 70
           TA++  Y K G +++AR++FDG++++D + WN MI GYA HG   + L LF +ML  +++
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 69  PTDITFIGVLSACSHAGLVVDGR 1
           P ++T + VLSAC   G +  GR
Sbjct: 70  PNEVTVLAVLSACGQTGALETGR 92