BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032603
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago t...   107   1e-21
ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
emb|CBI40853.3| unnamed protein product [Vitis vinifera]              106   2e-21
ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago t...   106   2e-21
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18

>ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355514334|gb|AES95957.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 676

 Score =  107 bits (266), Expect = 1e-21
 Identities = 49/86 (56%), Positives = 64/86 (74%)
 Frame = -2

Query: 258 KLIHAYLKCDIVDEARNLFDEMPLRHIVIWNSMISSYIRCKRYSEGIALYEMMVLEGVNA 79
           KLI  Y+KC ++ EAR LFDEMP RHIV WNSMISS++   +  E I LY+ M+ EGV  
Sbjct: 40  KLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLP 99

Query: 78  DEFTFSSVFRAFAELGFLRKGLKAHG 1
           D +TFS++F+AF+E+G  R+G KAHG
Sbjct: 100 DAYTFSAIFKAFSEMGVSREGQKAHG 125


>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/86 (60%), Positives = 65/86 (75%)
 Frame = -2

Query: 258 KLIHAYLKCDIVDEARNLFDEMPLRHIVIWNSMISSYIRCKRYSEGIALYEMMVLEGVNA 79
           KLI AYLKC  V  AR +FDE+P RHIV WNSMI+SYIR  R  E I +Y+ MV +G+  
Sbjct: 115 KLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILP 174

Query: 78  DEFTFSSVFRAFAELGFLRKGLKAHG 1
           DEFTFSSVF+AF++LG + +G +AHG
Sbjct: 175 DEFTFSSVFKAFSDLGLVHEGQRAHG 200


>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/86 (60%), Positives = 65/86 (75%)
 Frame = -2

Query: 258 KLIHAYLKCDIVDEARNLFDEMPLRHIVIWNSMISSYIRCKRYSEGIALYEMMVLEGVNA 79
           KLI AYLKC  V  AR +FDE+P RHIV WNSMI+SYIR  R  E I +Y+ MV +G+  
Sbjct: 116 KLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILP 175

Query: 78  DEFTFSSVFRAFAELGFLRKGLKAHG 1
           DEFTFSSVF+AF++LG + +G +AHG
Sbjct: 176 DEFTFSSVFKAFSDLGLVHEGQRAHG 201


>ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|358344096|ref|XP_003636129.1| Pentatricopeptide
           repeat protein [Medicago truncatula]
           gi|355501824|gb|AES83027.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
           gi|355502064|gb|AES83267.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 662

 Score =  106 bits (264), Expect = 2e-21
 Identities = 49/86 (56%), Positives = 63/86 (73%)
 Frame = -2

Query: 258 KLIHAYLKCDIVDEARNLFDEMPLRHIVIWNSMISSYIRCKRYSEGIALYEMMVLEGVNA 79
           KLI  Y+KC ++ EAR LFDEMP RHIV WNSMISS++   +  E I LY  M+ EGV  
Sbjct: 40  KLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLP 99

Query: 78  DEFTFSSVFRAFAELGFLRKGLKAHG 1
           D +TFS++F+AF+E+G  R+G KAHG
Sbjct: 100 DAYTFSAIFKAFSEMGVSREGQKAHG 125


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = -2

Query: 258 KLIHAYLKCDIVDEARNLFDEMPLRHIVIWNSMISSYIRCKRYSEGIALYEMMVLEGVNA 79
           KLI  Y+KC  + EAR LFDE+P RHIV WNSMISS+I   +  E +  Y  M++EGV  
Sbjct: 40  KLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLP 99

Query: 78  DEFTFSSVFRAFAELGFLRKGLKAHG 1
           D +TFS++ +AF++LG +R G +AHG
Sbjct: 100 DAYTFSAISKAFSQLGLIRHGQRAHG 125