BLASTX nr result
ID: Coptis24_contig00032550
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00032550
(317 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003637381.1| Pentatricopeptide repeat-containing protein ... 122 4e-26
ref|XP_002524030.1| pentatricopeptide repeat-containing protein,... 120 2e-25
ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25
ref|XP_003637626.1| Pentatricopeptide repeat-containing protein ... 118 4e-25
ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|2... 97 1e-18
>ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 122 bits (305), Expect = 4e-26
Identities = 54/98 (55%), Positives = 77/98 (78%), Gaps = 4/98 (4%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQ 192
DID V+YNTVI+GFC++GLV + GLLSEM+KRG+ D +TCN+LVKG+C+IGL+ AE
Sbjct: 159 DIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEW 218
Query: 193 VFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVE 294
V + G+ +DV+G NTL+DGYC+ G++S+ E++E
Sbjct: 219 VMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIE 256
Score = 75.9 bits (185), Expect = 3e-12
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA-- 186
++ YNT+I FC+ G+ ++A +L EM+KRG+ D VT N L++G+C ++ A
Sbjct: 772 ELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALK 831
Query: 187 --EQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVE 309
Q+F+DGI ++ YNTL+ G G++ E E E++ E
Sbjct: 832 TYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSE 874
Score = 70.1 bits (170), Expect = 2e-10
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQ 192
D + VSY T+I K G V EA L S+M+ RG+ D VTC ++ G ++G AE+
Sbjct: 388 DPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEE 447
Query: 193 VFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
VF + + V Y+ L+DGYCK G + ++++M+ E V
Sbjct: 448 VFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHV 492
Score = 66.2 bits (160), Expect = 3e-09
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVF 198
D + NT+I G+C+ GL+ +A L+ + V+ID VT N L+K FC+ G L AE +F
Sbjct: 231 DVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLF 290
Query: 199 -----------------------IDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVE 309
I ++ +V Y TL+ YCK+ + E + ++M +
Sbjct: 291 NEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMN 350
Query: 310 GV 315
G+
Sbjct: 351 GI 352
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
++N V+Y T+I +CK V+E+ L +MI G+ D VTC+ ++ GFC+ G L
Sbjct: 314 IKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLT 373
Query: 181 NAEQVFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
A +F + G++ + V Y T+++ K G + E F + +M V G+
Sbjct: 374 EAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 422
Score = 63.2 bits (152), Expect = 2e-08
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +1
Query: 4 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDN 183
R D+++ N ++ G+C+ GLVQ A ++ ++ GV D + N L+ G+C+ GL+
Sbjct: 191 RGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQ 250
Query: 184 A----EQVFIDGIERDVVGYNTLVDGYCKYG 264
A E + ++ D+V YNTL+ +CK G
Sbjct: 251 ATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281
Score = 62.4 bits (150), Expect = 4e-08
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 31 YNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVF--ID 204
+NT++Y F GLV + + S+M+ GV D + NVLV C++G LD A D
Sbjct: 97 WNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNND 156
Query: 205 GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
++ D V YNT++ G+C+ G++ +GF ++ M G+
Sbjct: 157 VVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGL 193
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +1
Query: 4 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDN 183
+ D D V+Y ++I G+ K+G A+ ++ EM ++ ++ D V N L+KG ++G D
Sbjct: 595 KGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP 654
Query: 184 ---AEQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
++ G+ D + YNT+++ YC G + +I+ MK G+
Sbjct: 655 RYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGI 701
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/104 (27%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
+R D V+ TV+ G K G +EA + ++K + +CVT + L+ G+C++G ++
Sbjct: 419 VRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKME 478
Query: 181 NAEQVF----IDGIERDVVGYNTLVDGYCKYGMISEGFEIVERM 300
AE V + + +V+ ++++++GY K GM+S+ +++ M
Sbjct: 479 LAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREM 522
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 39/138 (28%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA---- 186
D ++YNT+I +C +G ++A+ +L+EM G+ + VT N+L+ G C+ G ++ A
Sbjct: 669 DCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESAL 728
Query: 187 -----------------------------------EQVFIDGIERDVVGYNTLVDGYCKY 261
E++ G+E + YNTL+ +C+
Sbjct: 729 DEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRL 788
Query: 262 GMISEGFEIVERMKVEGV 315
GM + +++ M G+
Sbjct: 789 GMTRKAKVVLDEMVKRGI 806
Score = 56.6 bits (135), Expect = 2e-06
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 39/138 (28%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKG------------FC 162
+ ++++++I G+ K+G++ +AV +L EM++R V + + +L+ G FC
Sbjct: 495 NVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFC 554
Query: 163 Q-----------------------IGLLDNAEQVFID----GIERDVVGYNTLVDGYCKY 261
+ +G +D A + ID GI+ D+V Y +L+DGY K
Sbjct: 555 KEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKE 614
Query: 262 GMISEGFEIVERMKVEGV 315
G IV+ MK + +
Sbjct: 615 GNQLAALSIVQEMKEKNI 632
>ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536757|gb|EEF38398.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1016
Score = 120 bits (300), Expect = 2e-25
Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 6/111 (5%)
Frame = +1
Query: 1 LRNCDI--DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGL 174
LRN D+ DTV+YNTVI+GFC+ GLV +A G LS M+K+ D +TCN+LVKGFC+IGL
Sbjct: 68 LRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGL 127
Query: 175 LDNAEQVFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
E++ + G +DV+G+NTL+DGYCK G +S ++VERM+ EG+
Sbjct: 128 AKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGL 178
Score = 64.7 bits (156), Expect = 8e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +1
Query: 7 NCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA 186
N + D ++Y T+I +CKQ ++EA L EMI G D VT + +V G C+ G L A
Sbjct: 233 NLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEA 292
Query: 187 EQVFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
+++ + G++ + V Y TL+D K G E F ++ V G+
Sbjct: 293 QELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGM 339
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVF 198
DTV+YN +I G+C+ V++A+ ++M+ GV + VT N+L+ G GL+ +++F
Sbjct: 726 DTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELF 785
Query: 199 ----IDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEG 312
+G+ D Y+TL+ GY K G E + M +G
Sbjct: 786 DKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQG 827
Score = 62.8 bits (151), Expect = 3e-08
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Frame = +1
Query: 16 IDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA--- 186
I+ +YN +I FC+ + ++A +L MI+ G D VT N L++G+C+ + A
Sbjct: 690 INQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALAT 749
Query: 187 -EQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
Q+ +G+ ++V YN L+ G G+++E E+ ++MK G+
Sbjct: 750 YTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGL 793
Score = 62.0 bits (149), Expect = 5e-08
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA---- 186
D + +NT+I G+CK G + A+ L+ M K G+ D V+ N L+ GFC+ G D A
Sbjct: 146 DVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLL 205
Query: 187 ----------EQVFID-----------GIERDVVGYNTLVDGYCKYGMISEGFEIVERMK 303
+ VF + +E D++ Y T++ YCK + E + E M
Sbjct: 206 HEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMI 265
Query: 304 VEG 312
+ G
Sbjct: 266 ING 268
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Frame = +1
Query: 16 IDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQV 195
+D V+Y +++ GF K G A+ ++ EM ++ + D VT NVL+ G + G + A+ V
Sbjct: 516 LDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSV 574
Query: 196 FIDGIERDV----VGYNTLVDGYCKYGMISEGFEIVERMK 303
+ IE + YN ++ YCK G + E+ MK
Sbjct: 575 YSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMK 614
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +1
Query: 31 YNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVFID-G 207
+N +IY F GLV + + +EM+ V + T NVLV +C++G L A + +
Sbjct: 13 WNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILALDLLRNVD 72
Query: 208 IERDVVGYNTLVDGYCKYGMISEGFEIVERM 300
+E D V YNT++ G+C++G++++ F + M
Sbjct: 73 VEVDTVTYNTVIWGFCQHGLVNQAFGFLSIM 103
>ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Glycine max]
Length = 1012
Score = 119 bits (298), Expect = 3e-25
Identities = 55/102 (53%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
LRN D V+YNTV++GFCK+GL + GLLSEM+K+GV D VTCN+LVKG+CQIGL+
Sbjct: 68 LRNSVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQ 127
Query: 181 NAEQVFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVE 294
AE + + G+ D +G NTLVDGYC+ G++S ++VE
Sbjct: 128 YAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVE 169
Score = 66.6 bits (161), Expect = 2e-09
Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Frame = +1
Query: 16 IDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQV 195
+D + NT++ G+C+ GLV A+ L+ + K GV+ D VT N LV FC+ G L AE V
Sbjct: 143 LDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESV 202
Query: 196 F--IDGIERD-----------------------VVGYNTLVDGYCKYGMISEGFEIVERM 300
I G RD VV + TL+ YCK+ I + F + E+M
Sbjct: 203 VNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQM 262
Query: 301 KVEGV 315
+ GV
Sbjct: 263 IMSGV 267
Score = 65.5 bits (158), Expect = 4e-09
Identities = 30/105 (28%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA-- 186
+++ + YNT+I C+ G+ ++A +L+EM+ +G+ D VT N L++G+C ++ A
Sbjct: 687 NLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFN 746
Query: 187 --EQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
Q+ + GI ++ YN L++G G++ + ++V M+ G+
Sbjct: 747 TYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGL 791
Score = 63.5 bits (153), Expect = 2e-08
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQ 192
D + VSY T+I K G V EA S+M+ RG+ ID V C ++ G + G AE+
Sbjct: 303 DPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEE 362
Query: 193 VFIDGIERDV----VGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
+F ++ ++ V Y L+DG+CK G + ++++M+ E V
Sbjct: 363 MFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHV 407
Score = 59.3 bits (142), Expect = 3e-07
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
LR+ V++ T+I +CK + + L +MI GV D VTC+ ++ G C+ G L
Sbjct: 229 LRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLT 288
Query: 181 NA----EQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
A +++ G++ + V Y T++ K G + E F +M V G+
Sbjct: 289 EAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGI 337
Score = 56.6 bits (135), Expect = 2e-06
Identities = 33/95 (34%), Positives = 52/95 (54%)
Frame = +1
Query: 31 YNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVFIDGI 210
+N ++Y F G V + L SEM+ GV + + N+LV C++G L A + +
Sbjct: 13 WNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYLRNSV 72
Query: 211 ERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
D V YNT+V G+CK G+ +GF ++ M +GV
Sbjct: 73 F-DHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGV 106
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
+R ID V T++ G K G +EA + ++K + +CVT L+ G C++G ++
Sbjct: 334 VRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVE 393
Query: 181 NAEQVFIDGIERD-----VVGYNTLVDGYCKYGMISEGFEIVERM 300
AE V + +E++ VV ++++++GY K GM+++ E++ +M
Sbjct: 394 FAETV-LQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKM 437
>ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503561|gb|AES84764.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 989
Score = 118 bits (296), Expect = 4e-25
Identities = 53/98 (54%), Positives = 76/98 (77%), Gaps = 4/98 (4%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQ 192
DID V+YNTVI+GFC++GLV + GLLSEM+KRG+ D +TCN+LVKG+C+IGL+ AE
Sbjct: 159 DIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEW 218
Query: 193 VFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVE 294
V + G+ +DV+G NTL+DGYC+ ++S+ E++E
Sbjct: 219 VMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIE 256
Score = 70.1 bits (170), Expect = 2e-10
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +1
Query: 13 DIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQ 192
D + VSY T+I K G V EA L S+M+ RG+ D VTC ++ G ++G AE+
Sbjct: 388 DPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEE 447
Query: 193 VFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
VF + + V Y+ L+DGYCK G + ++++M+ E V
Sbjct: 448 VFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHV 492
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
++N V+Y T+I +CK V+E+ L +MI G+ D VTC+ ++ GFC+ G L
Sbjct: 314 IKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLT 373
Query: 181 NAEQVFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
A +F + G++ + V Y T+++ K G + E F + +M V G+
Sbjct: 374 EAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 422
Score = 62.8 bits (151), Expect = 3e-08
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 23/122 (18%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVF 198
D + NT+I G+C+ L+ +A L+ + V+ID VT N L+K FC+ G L AE +F
Sbjct: 231 DVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLF 290
Query: 199 -----------------------IDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVE 309
I ++ +V Y TL+ YCK+ + E + ++M +
Sbjct: 291 NEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMN 350
Query: 310 GV 315
G+
Sbjct: 351 GI 352
Score = 62.4 bits (150), Expect = 4e-08
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 31 YNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVF--ID 204
+NT++Y F GLV + + S+M+ GV D + NVLV C++G LD A D
Sbjct: 97 WNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNND 156
Query: 205 GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
++ D V YNT++ G+C+ G++ +GF ++ M G+
Sbjct: 157 VVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGL 193
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +1
Query: 4 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDN 183
+ D D V+Y ++I G+ K+G A+ ++ EM ++ ++ D V N L+KG ++G D
Sbjct: 595 KGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP 654
Query: 184 ---AEQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
++ G+ D + YNT+++ YC G + +I+ MK G+
Sbjct: 655 RYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGI 701
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +1
Query: 4 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDN 183
R D+++ N ++ G+C+ GLVQ A ++ ++ GV D + N L+ G+C+ L+
Sbjct: 191 RGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQ 250
Query: 184 A----EQVFIDGIERDVVGYNTLVDGYCKYG 264
A E + ++ D+V YNTL+ +CK G
Sbjct: 251 ATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/104 (27%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
+R D V+ TV+ G K G +EA + ++K + +CVT + L+ G+C++G ++
Sbjct: 419 VRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKME 478
Query: 181 NAEQVF----IDGIERDVVGYNTLVDGYCKYGMISEGFEIVERM 300
AE V + + +V+ ++++++GY K GM+S+ +++ M
Sbjct: 479 LAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREM 522
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 88 LLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA----EQVFIDGIERDVVGYNTLVDGYC 255
+L EM+KRG+ D VT N L++G+C ++ A Q+F+DGI ++ YNTL+ G
Sbjct: 763 VLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLS 822
Query: 256 KYGMISEGFEIVERMKVE 309
G++ E E E++ E
Sbjct: 823 NAGLMEEMMEETEKLVSE 840
Score = 56.6 bits (135), Expect = 2e-06
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 39/138 (28%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKG------------FC 162
+ ++++++I G+ K+G++ +AV +L EM++R V + + +L+ G FC
Sbjct: 495 NVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFC 554
Query: 163 Q-----------------------IGLLDNAEQVFID----GIERDVVGYNTLVDGYCKY 261
+ +G +D A + ID GI+ D+V Y +L+DGY K
Sbjct: 555 KEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKE 614
Query: 262 GMISEGFEIVERMKVEGV 315
G IV+ MK + +
Sbjct: 615 GNQLAALSIVQEMKEKNI 632
>ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|222853877|gb|EEE91424.1|
predicted protein [Populus trichocarpa]
Length = 724
Score = 97.4 bits (241), Expect = 1e-18
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Frame = +1
Query: 4 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDN 183
R C +D ++YN +I CK G V++ +GL EMI++G+ +TCN+L+ GFC G + N
Sbjct: 551 RGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHN 610
Query: 184 AEQVFIDGIER----DVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
A + D I R D+V YN+L++G CK G I E + E+++ EG+
Sbjct: 611 ALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGI 658
Score = 67.4 bits (163), Expect = 1e-09
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA---- 186
D +++T++ G CK+GL A+ L+++M +G + + T +L+ GFC+ G L+ A
Sbjct: 381 DVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLIL 440
Query: 187 EQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEG 312
++ G + VGYN L+ CK+G I E ++ M +G
Sbjct: 441 REMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKG 482
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Frame = +1
Query: 16 IDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNA--- 186
++TV YN +I CK G + EA+ + EM +G + D T N L+ G C++ +++A
Sbjct: 450 LNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL 509
Query: 187 -EQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEG 312
+ ++G+ + V +NTL+ + + G I E ++V M G
Sbjct: 510 YRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG 552
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/97 (34%), Positives = 52/97 (53%)
Frame = +1
Query: 1 LRNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLD 180
L C D ++NTVIYGFC+ V E L+ MI +G + +T L+ G C+ +D
Sbjct: 273 LMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRID 332
Query: 181 NAEQVFIDGIERDVVGYNTLVDGYCKYGMISEGFEIV 291
A+ + +VV +NTLV+G+ + G ++E V
Sbjct: 333 EAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFV 369
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Frame = +1
Query: 4 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDN 183
+ C + +Y +I GFCK+G ++EA +L EM+ +G ++ V N L+ C+ G +
Sbjct: 411 KGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHE 470
Query: 184 AEQVFID----GIERDVVGYNTLVDGYCKYGMISEGFEIVERMKVEGV 315
A +F + G + D+ +N+L+ G C+ + + + M +EGV
Sbjct: 471 ALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGV 518
Score = 55.8 bits (133), Expect = 4e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 19 DTVSYNTVIYGFCKQGLVQEAVGLLSEMIKRGVQIDCVTCNVLVKGFCQIGLLDNAEQVF 198
D V+YN++I G CK+G +QEA+ L ++ G+Q D +T N L+ C+ G D+A +
Sbjct: 626 DIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLL 685
Query: 199 IDGIERDVV 225
G+E V
Sbjct: 686 YRGVENGFV 694