BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032487
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26289.3| unnamed protein product [Vitis vinifera]              121   7e-26
ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi...   109   3e-22
ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|2...   101   7e-20
ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ...    98   6e-19

>emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  121 bits (303), Expect = 7e-26
 Identities = 63/99 (63%), Positives = 76/99 (76%)
 Frame = -2

Query: 299 KMVVTCAEIATLESLDYARKVFELFAKYREMCDFLFLWNSLIRGYASVGLGDESIFLYLR 120
           K+V   AEIA+ ESLDYARK FELF +     D LF+ NSLIRGY+S GLG E+I LY+R
Sbjct: 62  KLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVR 121

Query: 119 MMNEGVVPDNFTFPFVLSGCTKILAFREGNQVHGCLMKM 3
           M+  GV P+++TFPFVLSGCTKI AF EG QVHG ++KM
Sbjct: 122 MLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKM 160


>ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  121 bits (303), Expect = 7e-26
 Identities = 63/99 (63%), Positives = 76/99 (76%)
 Frame = -2

Query: 299 KMVVTCAEIATLESLDYARKVFELFAKYREMCDFLFLWNSLIRGYASVGLGDESIFLYLR 120
           K+V   AEIA+ ESLDYARK FELF +     D LF+ NSLIRGY+S GLG E+I LY+R
Sbjct: 62  KLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVR 121

Query: 119 MMNEGVVPDNFTFPFVLSGCTKILAFREGNQVHGCLMKM 3
           M+  GV P+++TFPFVLSGCTKI AF EG QVHG ++KM
Sbjct: 122 MLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKM 160


>ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  109 bits (272), Expect = 3e-22
 Identities = 54/100 (54%), Positives = 71/100 (71%)
 Frame = -2

Query: 302 NKMVVTCAEIATLESLDYARKVFELFAKYREMCDFLFLWNSLIRGYASVGLGDESIFLYL 123
           NK++ +  +I TLESLDYAR  F            LF++N LIRGYAS GLGD++I LY+
Sbjct: 63  NKLIASSVQIGTLESLDYARNAF---GDDDGNMASLFMYNCLIRGYASAGLGDQAILLYV 119

Query: 122 RMMNEGVVPDNFTFPFVLSGCTKILAFREGNQVHGCLMKM 3
           +M+  G+VPD +TFPF+LS C+KILA  EG QVHG ++KM
Sbjct: 120 QMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKM 159


>ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|222863715|gb|EEF00846.1|
           predicted protein [Populus trichocarpa]
          Length = 845

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/98 (47%), Positives = 70/98 (71%)
 Frame = -2

Query: 296 MVVTCAEIATLESLDYARKVFELFAKYREMCDFLFLWNSLIRGYASVGLGDESIFLYLRM 117
           ++ +C E+ T ESL+YA+K  ELF +   +    ++++SLIRG+++ GLG ++I ++ ++
Sbjct: 71  LISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQL 130

Query: 116 MNEGVVPDNFTFPFVLSGCTKILAFREGNQVHGCLMKM 3
           M  G VPDNFTFPFVLS CTK  A  EG QVHG ++KM
Sbjct: 131 MCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKM 168


>ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512083|gb|AES93706.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 828

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/101 (51%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
 Frame = -2

Query: 302 NKMVVTCAEIATLESLDYARKVFELFAKYREMCDFLFLWNSLIRGYASVGLGDESIFLYL 123
           NK++  C ++ T ESL+YA   F+        C  L+  N+LIRGYA+ GL  E+IF+YL
Sbjct: 54  NKLIAACVQMGTHESLNYALNAFK--EDEGTKCS-LYTCNTLIRGYAASGLCKEAIFIYL 110

Query: 122 RMMNE-GVVPDNFTFPFVLSGCTKILAFREGNQVHGCLMKM 3
            M+   G+VPDNFTFPF+LS C+KI+AF EG QVHG ++KM
Sbjct: 111 HMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM 151