BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032415
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   131   5e-29
ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   131   5e-29
ref|XP_002516017.1| pentatricopeptide repeat-containing protein,...   130   1e-28
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   128   5e-28

>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  145 bits (367), Expect = 3e-33
 Identities = 71/99 (71%), Positives = 84/99 (84%)
 Frame = -3

Query: 298 QACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVV 119
           +AC+ LSA+E GREIHE+V++TGW  DVFVGAALI MYAKCG V S R+VFDKIL RD V
Sbjct: 184 KACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV 243

Query: 118 LWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATLVT 2
           LWNSM+AAYSQNG+ +A L+LC EM +TGLR +EATLVT
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVT 282



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 39/119 (32%), Positives = 62/119 (52%)
 Frame = -3

Query: 385 IKNHSHPFLKLTNTTCLYFNLALKKELLNQACSTLSALEQGREIHENVIRTGWGCDVFVG 206
           I + S+P  + T  T  Y N A     L Q+C    A++ G+++H  V   G+G D  + 
Sbjct: 58  IPSCSNPHAESTCLTPTYSNYAS----LLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIA 113

Query: 205 AALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIAAYSQNGYSNAALALCREMGVTGL 29
             L+ +Y  C ++ S R +FD+I   ++ LWN +I  Y+ NG   AA+ L  +M   GL
Sbjct: 114 TKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGL 172



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/79 (41%), Positives = 48/79 (60%)
 Frame = -3

Query: 280 SALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMI 101
           +AL QGRE+H    R  +     V  AL+ MYAKCG+V   R +F+++  + VV WN+MI
Sbjct: 291 AALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMI 350

Query: 100 AAYSQNGYSNAALALCREM 44
             Y+ +G++  AL L  EM
Sbjct: 351 TGYAMHGHATEALDLFEEM 369


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  131 bits (330), Expect = 5e-29
 Identities = 62/99 (62%), Positives = 79/99 (79%)
 Frame = -3

Query: 298 QACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVV 119
           +ACS LSA+ +GR IHE VI++GW  D+FVGAALI MYAKCG V    +VFDKI+ RD V
Sbjct: 156 KACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAV 215

Query: 118 LWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATLVT 2
           LWNSM+AAY+QNG+ + +++LCREM   G+R +EATLVT
Sbjct: 216 LWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVT 254



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/80 (38%), Positives = 48/80 (60%)
 Frame = -3

Query: 283 LSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSM 104
           ++ L  GREIH    R G+  +  V  ALI MYAKCG+V+    +F+++  + VV WN++
Sbjct: 262 VACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAI 321

Query: 103 IAAYSQNGYSNAALALCREM 44
           I  Y+ +G +  AL L  +M
Sbjct: 322 ITGYAMHGLAVGALDLFDKM 341



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/99 (31%), Positives = 51/99 (51%)
 Frame = -3

Query: 304 LNQACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRD 125
           L Q+C    AL  G+++H      G   +  +   L+ +YA   ++ + R +FDKI  ++
Sbjct: 53  LLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQN 112

Query: 124 VVLWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATL 8
           + LWN +I  Y+ NG  + A+ L  +M   GLR    TL
Sbjct: 113 LFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTL 151


>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  131 bits (330), Expect = 5e-29
 Identities = 63/99 (63%), Positives = 77/99 (77%)
 Frame = -3

Query: 298 QACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVV 119
           +ACS LS + +GR IHE VIR+GW  DVFVGAAL+ MYAKCG V   R VFDKI+ RD V
Sbjct: 167 KACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAV 226

Query: 118 LWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATLVT 2
           LWNSM+AAY+QNG+ + +L+LC EM   G+R +EATLVT
Sbjct: 227 LWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVT 265



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/99 (30%), Positives = 55/99 (55%)
 Frame = -3

Query: 304 LNQACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRD 125
           L ++C +  ALE G+++H  + + G   ++ +   L+  Y+ C ++ +   +FDKI   +
Sbjct: 64  LLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGN 123

Query: 124 VVLWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATL 8
           + LWN +I AY+ NG    A++L  +M   GL+    TL
Sbjct: 124 LFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTL 162



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/80 (38%), Positives = 47/80 (58%)
 Frame = -3

Query: 283 LSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSM 104
           ++ L  GREIH    R G+  +  V  ALI MYAKCG+V+    +F+++  + VV WN++
Sbjct: 273 IACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAI 332

Query: 103 IAAYSQNGYSNAALALCREM 44
           I  Y+ +G +  AL L   M
Sbjct: 333 ITGYAMHGLAVEALDLFERM 352


>ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544922|gb|EEF46437.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  130 bits (326), Expect = 1e-28
 Identities = 64/99 (64%), Positives = 78/99 (78%)
 Frame = -3

Query: 298 QACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVV 119
           +ACS LSA+E GR IHE V+R+GW  DVFVGAALI MY+KCG V++ R+VF K   RD V
Sbjct: 196 KACSALSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAV 255

Query: 118 LWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATLVT 2
           LWNSM+AAYSQNG  + +LALC EM + G+R +EATLVT
Sbjct: 256 LWNSMLAAYSQNGKPDKSLALCSEMVLAGVRPTEATLVT 294



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/84 (38%), Positives = 51/84 (60%)
 Frame = -3

Query: 295 ACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVL 116
           A + ++AL QGRE+H    R  +  +  V   LI MYAKCG ++  + +F+++  ++VV 
Sbjct: 298 ASADIAALPQGRELHGFAWRRRFESNDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVS 357

Query: 115 WNSMIAAYSQNGYSNAALALCREM 44
           WN++I  Y+ +GYSN  L L   M
Sbjct: 358 WNAIITGYAMHGYSNEVLILFDRM 381


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  128 bits (321), Expect = 5e-28
 Identities = 63/98 (64%), Positives = 77/98 (78%)
 Frame = -3

Query: 298 QACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVV 119
           +ACS LSA+E+G++IH++VIR+G   DVFVGAALI MYAKCG VES R+VFDKI  RDVV
Sbjct: 110 KACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVV 169

Query: 118 LWNSMIAAYSQNGYSNAALALCREMGVTGLRLSEATLV 5
            WNSM+A YSQNG  + +LALCR M   GL+ +E T V
Sbjct: 170 CWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFV 207



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/77 (41%), Positives = 48/77 (62%)
 Frame = -3

Query: 274 LEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRDVVLWNSMIAA 95
           L QG+E+H    R G+  +  V  AL+ MYAK G+V   R +F+ +  + VV WN+MI  
Sbjct: 219 LPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG 278

Query: 94  YSQNGYSNAALALCREM 44
           Y+ +G++N AL L +EM
Sbjct: 279 YAMHGHANEALDLFKEM 295



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 50/92 (54%)
 Frame = -3

Query: 304 LNQACSTLSALEQGREIHENVIRTGWGCDVFVGAALIGMYAKCGAVESGRKVFDKILGRD 125
           L Q+C    A+E G+++H  + + G   +  +   L+ +Y  C ++ +   +FD+I  R+
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66

Query: 124 VVLWNSMIAAYSQNGYSNAALALCREMGVTGL 29
           + LWN MI  Y+ NG    A++L  +M   GL
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYGL 98