BLASTX nr result
ID: Coptis24_contig00032400
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00032400
(600 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531588.1| conserved hypothetical protein [Ricinus comm... 95 1e-23
ref|XP_003530952.1| PREDICTED: eukaryotic translation initiation... 92 1e-22
ref|XP_003521511.1| PREDICTED: eukaryotic translation initiation... 93 2e-22
ref|XP_002460451.1| hypothetical protein SORBIDRAFT_02g028310 [S... 89 3e-22
ref|XP_003525194.1| PREDICTED: eukaryotic translation initiation... 93 7e-22
>ref|XP_002531588.1| conserved hypothetical protein [Ricinus communis]
gi|223528784|gb|EEF30791.1| conserved hypothetical
protein [Ricinus communis]
Length = 293
Score = 95.1 bits (235), Expect(2) = 1e-23
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = +1
Query: 1 SKTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDN 180
SKTFR+L E S+RQTFT P NV D+VMAA+RAL +GDF K+F++I S D WR L NRD+
Sbjct: 14 SKTFRRLLEVSERQTFTGPPENVRDHVMAATRALSKGDFQKAFDIINSLDVWRLLRNRDS 73
Query: 181 VLEMLMTKIKEVAL 222
VL ML KIKE AL
Sbjct: 74 VLGMLKAKIKEEAL 87
Score = 40.0 bits (92), Expect(2) = 1e-23
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 YSSLSADLLTTWFNLPEDQRAHHSEQDDDSI-VELHASGSLHARHIV------TKLLALV 400
Y SL D LT F+L E Q HS I ELHAS + I+ T+L L
Sbjct: 98 YESLGLDQLTKMFDLSEAQT--HSIVSKMMINEELHASWDQPTQCIIFHNVQHTRLQGLA 155
Query: 401 S*LTKKSSIVAESNSKFVEAR 463
LT+K S++AESN + +EAR
Sbjct: 156 FQLTEKLSVLAESNERAIEAR 176
>ref|XP_003530952.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
C-like [Glycine max]
Length = 926
Score = 92.4 bits (228), Expect(2) = 1e-22
Identities = 46/74 (62%), Positives = 57/74 (77%)
Frame = +1
Query: 1 SKTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDN 180
SKTFR+L E S++QTFT P NV D+VMAA+R L +GDF K+F++I S D W+F+ NRD
Sbjct: 656 SKTFRRLLEVSEKQTFTGPPENVRDHVMAATRILRKGDFQKAFDIIVSLDVWKFVRNRDT 715
Query: 181 VLEMLMTKIKEVAL 222
VLEML KIKE AL
Sbjct: 716 VLEMLKDKIKEEAL 729
Score = 39.3 bits (90), Expect(2) = 1e-22
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +2
Query: 242 YSSLSADLLTTWFNLPEDQRAHHSEQDDDSIVELHASGSLHARHIV------TKLLALVS 403
Y SLS D LT +F+L R H ELHAS I+ ++L ALV
Sbjct: 740 YESLSLDQLTKFFDLSVS-RTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALVF 798
Query: 404 *LTKKSSIVAESNSKFVEAR 463
LT+K S++AESN K EAR
Sbjct: 799 QLTEKLSVLAESNEKATEAR 818
>ref|XP_003521511.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
C-like [Glycine max]
Length = 926
Score = 93.2 bits (230), Expect(2) = 2e-22
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = +1
Query: 1 SKTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDN 180
SKTFR+L E S RQTFT P NV D+VMAA+R L +GDF K+F++I S D W+F+ NRD
Sbjct: 654 SKTFRRLLEVSDRQTFTGPPENVRDHVMAATRFLSKGDFQKAFDIIVSLDVWKFVRNRDT 713
Query: 181 VLEMLMTKIKEVAL 222
VLEML KIKE AL
Sbjct: 714 VLEMLKDKIKEEAL 727
Score = 38.1 bits (87), Expect(2) = 2e-22
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 YSSLSADLLTTWFNLPEDQRAHHSEQDDDSI-VELHASGSLHARHIV------TKLLALV 400
Y SLS D LT +F+LP HS I ELHAS I+ ++L AL
Sbjct: 738 YESLSLDQLTKFFDLPVS--CTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALA 795
Query: 401 S*LTKKSSIVAESNSKFVEAR 463
LT+K SI+AESN + EAR
Sbjct: 796 FQLTEKLSILAESNERATEAR 816
>ref|XP_002460451.1| hypothetical protein SORBIDRAFT_02g028310 [Sorghum bicolor]
gi|241923828|gb|EER96972.1| hypothetical protein
SORBIDRAFT_02g028310 [Sorghum bicolor]
Length = 1046
Score = 89.4 bits (220), Expect(2) = 3e-22
Identities = 45/74 (60%), Positives = 56/74 (75%)
Frame = +1
Query: 1 SKTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDN 180
SKTFR+L E S+RQTF P NV D+VMAA+RAL +GD K+F++I S + W+ L NRD+
Sbjct: 777 SKTFRRLLEVSERQTFVGPPENVRDHVMAATRALNKGDHQKAFSVINSLEIWKLLRNRDH 836
Query: 181 VLEMLMTKIKEVAL 222
VLEML KIKE AL
Sbjct: 837 VLEMLKLKIKEEAL 850
Score = 41.2 bits (95), Expect(2) = 3e-22
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Frame = +2
Query: 224 RIRLFDYSS----LSADLLTTWFNLPEDQRAHHSEQDDDSIVELHASGSLHARHIV---- 379
R LF YSS LS + LTT F+L E Q AH ELHAS + IV
Sbjct: 851 RTYLFSYSSCYESLSLNQLTTMFDLSE-QHAHSIVSKMMMHEELHASWDQPTKCIVFHSV 909
Query: 380 --TKLLALVS*LTKKSSIVAESNSKFVEART 466
T+L L+ + K S++ ESN + EART
Sbjct: 910 DQTRLQGLLFQMADKLSVLVESNERAYEART 940
>ref|XP_003525194.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
C-like [Glycine max]
Length = 925
Score = 92.8 bits (229), Expect(2) = 7e-22
Identities = 46/74 (62%), Positives = 57/74 (77%)
Frame = +1
Query: 1 SKTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDN 180
SKTFR+L E S++QTFT P NV D+VMAA+R L +GDF K+F++I S D W+F+ NRD
Sbjct: 655 SKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLNKGDFQKAFDIIVSLDVWKFVRNRDT 714
Query: 181 VLEMLMTKIKEVAL 222
VLEML KIKE AL
Sbjct: 715 VLEMLKDKIKEEAL 728
Score = 36.6 bits (83), Expect(2) = 7e-22
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 242 YSSLSADLLTTWFNLPEDQRAHHSEQDDDSIVELHASGSLHARHIV------TKLLALVS 403
Y SLS D LT +F+L R H ELHAS I+ ++L AL
Sbjct: 739 YESLSLDQLTKFFDLSVC-RTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAF 797
Query: 404 *LTKKSSIVAESNSKFVEAR 463
LT+K S++AESN K EAR
Sbjct: 798 QLTEKLSVLAESNEKAAEAR 817