BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032388
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...    72   6e-11
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...    71   8e-11
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...    71   8e-11
ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative ...    70   2e-10
ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...    69   3e-10

>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
           gi|222833309|gb|EEE71786.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 1056

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/45 (77%), Positives = 35/45 (77%)
 Frame = -3

Query: 217 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 83
           VQEAAS SIFVQMPDVWINLAHVYFAQG F LAVKM       FF
Sbjct: 698 VQEAASGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLQKFF 742


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
           max]
          Length = 1088

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/45 (75%), Positives = 36/45 (80%)
 Frame = -3

Query: 217 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 83
           VQEAAS S+FVQMPDVWINLAHVYFAQG FTLAVKM       F+
Sbjct: 700 VQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFY 744


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
           max]
          Length = 1086

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/45 (75%), Positives = 36/45 (80%)
 Frame = -3

Query: 217 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 83
           VQEAAS S+FVQMPDVWINLAHVYFAQG FTLAVKM       F+
Sbjct: 697 VQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFY 741


>ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis]
           gi|223544778|gb|EEF46294.1| tpr repeat nuclear
           phosphoprotein, putative [Ricinus communis]
          Length = 1065

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 34/45 (75%), Positives = 35/45 (77%)
 Frame = -3

Query: 217 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 83
           VQEAAS SIFVQMPDVWINLAHVYFAQG F LAVKM       F+
Sbjct: 674 VQEAASGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFY 718


>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
           vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
           product [Vitis vinifera]
          Length = 1091

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 33/45 (73%), Positives = 35/45 (77%)
 Frame = -3

Query: 217 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 83
           VQEAAS S+FVQMPDVWINLAHVYFAQG F LAVKM       F+
Sbjct: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFY 745