BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032382
         (584 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588264.1| hypothetical protein MTR_1g005050 [Medicago ...    95   7e-18
dbj|BAM36209.1| NADH dehydrogenase subunit 4 (mitochondrion) [Ra...    64   2e-08
ref|YP_006280924.1| NADH dehydrogenase subunit 4 (mitochondrion)...    64   2e-08
ref|YP_005090381.1| NADH dehydrogenase subunit 4 (mitochondrion)...    64   2e-08
ref|YP_004927572.1| nad4 (mitochondrion) [Brassica carinata] gi|...    64   2e-08

>ref|XP_003588264.1| hypothetical protein MTR_1g005050 [Medicago truncatula]
           gi|355477312|gb|AES58515.1| hypothetical protein
           MTR_1g005050 [Medicago truncatula]
          Length = 334

 Score = 95.1 bits (235), Expect = 7e-18
 Identities = 53/99 (53%), Positives = 55/99 (55%)
 Frame = +3

Query: 288 WPTPPKSAYVIWELMAGNNPYGFDIR*E**EKSPGWLVSLVIGDYLAWFGEHLLGFFVVK 467
           WP+PPKSAYVIWELM                +SPGWLVSLVIGDYLAWFGEHLL      
Sbjct: 276 WPSPPKSAYVIWELM---------------NQSPGWLVSLVIGDYLAWFGEHLL------ 314

Query: 468 CYGLNAELLTLLVRMGVHPKVFPDCMHTSVSNLVQHGKF 584
                               VFPD MHT VSNLVQHGKF
Sbjct: 315 --------------------VFPDRMHTYVSNLVQHGKF 333


>dbj|BAM36209.1| NADH dehydrogenase subunit 4 (mitochondrion) [Raphanus sativus]
          Length = 495

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 501 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 584
           LVRMGVHPKVFPDCMHTSVSNLVQHGKF
Sbjct: 467 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 494


>ref|YP_006280924.1| NADH dehydrogenase subunit 4 (mitochondrion) [Spirodela polyrhiza]
           gi|385252625|gb|AFI54933.1| NADH dehydrogenase subunit 4
           (mitochondrion) [Spirodela polyrhiza]
          Length = 493

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 501 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 584
           LVRMGVHPKVFPDCMHTSVSNLVQHGKF
Sbjct: 465 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 492


>ref|YP_005090381.1| NADH dehydrogenase subunit 4 (mitochondrion) [Phoenix dactylifera]
           gi|343478433|gb|AEM43921.1| NADH dehydrogenase subunit 4
           (mitochondrion) [Phoenix dactylifera]
          Length = 495

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 501 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 584
           LVRMGVHPKVFPDCMHTSVSNLVQHGKF
Sbjct: 467 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 494


>ref|YP_004927572.1| nad4 (mitochondrion) [Brassica carinata]
           gi|335355033|gb|AEH43587.1| nad4 [Brassica carinata]
          Length = 495

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 501 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 584
           LVRMGVHPKVFPDCMHTSVSNLVQHGKF
Sbjct: 467 LVRMGVHPKVFPDCMHTSVSNLVQHGKF 494