BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032345
         (362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...   127   7e-28
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi...   125   3e-27
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...   125   3e-27
ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ...   104   8e-21

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  134 bits (336), Expect = 1e-29
 Identities = 72/138 (52%), Positives = 89/138 (64%), Gaps = 18/138 (13%)
 Frame = -3

Query: 360 ETSILSCKSIP-------QVPNLVNSSKPINPTISFTS-----------KATELHLNHLC 235
           E  IL CKS P       Q  +   SS+ I P +SFT            K T+ HLNHLC
Sbjct: 2   ENLILPCKSRPPLATPSKQGTSFECSSRIIQPRVSFTKIHQPLTPKLKPKVTDAHLNHLC 61

Query: 234 RNGQLKEAVNALDTISKQGNKLTSNAYISLLQHCIDSNSIEQGRKVHSRISLVDEMNPFV 55
           +NG+L +A+  LD I++ G+ +  N Y+ LLQ CID  S E GRK+H+RI L++EMNPFV
Sbjct: 62  KNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNPFV 121

Query: 54  ETKLVSMYAKCGSLGEAR 1
           ETKLVSMYAKCGSLGEAR
Sbjct: 122 ETKLVSMYAKCGSLGEAR 139


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score =  127 bits (320), Expect = 7e-28
 Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
 Frame = -3

Query: 336 SIPQVPNLVN--SSKPINPTISFTSKATELHLNHLCRNGQLKEAVNALDTISKQGNKLTS 163
           SIP   + ++  S+KP   ++ FT K T+ HLN+LC+ G+L EAV+AL+ I++ G+K++ 
Sbjct: 15  SIPNEQDTLSAFSTKPTKSSVPFTKKITDSHLNYLCKKGRLNEAVSALELIAQHGSKVSP 74

Query: 162 NAYISLLQHCIDSNSIEQGRKVHSRISLVDEMNPFVETKLVSMYAKCGSLGEAR 1
             +ISLLQ CID NS+  GRKVH+   LV E NPF+ETKLVSMYAKCGSL +AR
Sbjct: 75  KTFISLLQSCIDCNSVTLGRKVHAHFHLVQEKNPFLETKLVSMYAKCGSLSDAR 128


>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  125 bits (315), Expect = 3e-27
 Identities = 64/106 (60%), Positives = 81/106 (76%), Gaps = 4/106 (3%)
 Frame = -3

Query: 306 SSKPINPTISFTSKATEL----HLNHLCRNGQLKEAVNALDTISKQGNKLTSNAYISLLQ 139
           SSKPI  +I FT K T      HL++LC NG L+EA+ A+D+ISK+G+KL++N YI+LLQ
Sbjct: 29  SSKPIKTSIFFTYKLTSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQ 88

Query: 138 HCIDSNSIEQGRKVHSRISLVDEMNPFVETKLVSMYAKCGSLGEAR 1
            CID  SIE GR++H R+ LV  +NPFVETKLVSMYAKCG L +AR
Sbjct: 89  TCIDVGSIELGRELHVRMGLVHRVNPFVETKLVSMYAKCGCLKDAR 134


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  125 bits (315), Expect = 3e-27
 Identities = 64/106 (60%), Positives = 81/106 (76%), Gaps = 4/106 (3%)
 Frame = -3

Query: 306 SSKPINPTISFTSKATEL----HLNHLCRNGQLKEAVNALDTISKQGNKLTSNAYISLLQ 139
           SSKPI  +I FT K T      HL++LC NG L+EA+ A+D+ISK+G+KL++N YI+LLQ
Sbjct: 29  SSKPIKTSIFFTYKLTSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQ 88

Query: 138 HCIDSNSIEQGRKVHSRISLVDEMNPFVETKLVSMYAKCGSLGEAR 1
            CID  SIE GR++H R+ LV  +NPFVETKLVSMYAKCG L +AR
Sbjct: 89  TCIDVGSIELGRELHVRMGLVHRVNPFVETKLVSMYAKCGCLKDAR 134


>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517031|gb|AES98654.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  104 bits (259), Expect = 8e-21
 Identities = 56/116 (48%), Positives = 76/116 (65%)
 Frame = -3

Query: 348 LSCKSIPQVPNLVNSSKPINPTISFTSKATELHLNHLCRNGQLKEAVNALDTISKQGNKL 169
           +S K +    N V+++KP         K  +  LN LC NG L EAV  LD++++QG ++
Sbjct: 28  ISSKRVNANSNNVSTTKPS------IRKLIDSQLNQLCINGSLSEAVTILDSLAEQGCRV 81

Query: 168 TSNAYISLLQHCIDSNSIEQGRKVHSRISLVDEMNPFVETKLVSMYAKCGSLGEAR 1
               Y++LLQ CID + I  G+++HSRI LV+ +NPFVETKLVSMYAKCG LG AR
Sbjct: 82  KPITYMNLLQSCIDKDCIFIGKELHSRIGLVENVNPFVETKLVSMYAKCGLLGMAR 137