BLASTX nr result

ID: Coptis24_contig00032249 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032249
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29284.3| unnamed protein product [Vitis vinifera]              119   3e-25
emb|CAN74599.1| hypothetical protein VITISV_021494 [Vitis vinifera]   111   5e-23
ref|XP_002297892.1| predicted protein [Populus trichocarpa] gi|2...    93   3e-17
gb|ABK25914.1| unknown [Picea sitchensis]                              78   6e-13
gb|ABR17311.1| unknown [Picea sitchensis]                              73   2e-11

>emb|CBI29284.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/101 (59%), Positives = 76/101 (75%)
 Frame = +2

Query: 11  MAVLDQTVQVLDLSPKVTLGDLNSFFLYCGTVEKILLERKEDQSQLAYVTFRQPFALQTA 190
           M  L+ TVQVLD+SPKVTL DLN FF YCGTV+ I L RK DQ+QLA+VTF+QP+A QTA
Sbjct: 1   MGTLNLTVQVLDISPKVTLSDLNIFFSYCGTVDNIQLCRKNDQTQLAFVTFKQPYAFQTA 60

Query: 191 LLLNGAFIMDNRVRILPLRSIESPPVSYNMHDRTKKNEKQG 313
           LLLNGA I D+ +RIL L+++   P+    + +T+  EKQG
Sbjct: 61  LLLNGAVIGDSPIRILALQNLAIHPIPDKRNCKTQNKEKQG 101


>emb|CAN74599.1| hypothetical protein VITISV_021494 [Vitis vinifera]
          Length = 212

 Score =  111 bits (278), Expect = 5e-23
 Identities = 56/93 (60%), Positives = 70/93 (75%)
 Frame = +2

Query: 35  QVLDLSPKVTLGDLNSFFLYCGTVEKILLERKEDQSQLAYVTFRQPFALQTALLLNGAFI 214
           QVLD+SPKVTL DLN FF YCGTV+ I L RK DQ+QLA+VTF+QP+A QTALLLNGA I
Sbjct: 28  QVLDISPKVTLSDLNIFFSYCGTVDNIQLCRKNDQTQLAFVTFKQPYAFQTALLLNGAVI 87

Query: 215 MDNRVRILPLRSIESPPVSYNMHDRTKKNEKQG 313
            D+ +RIL L+++   P+    +  T+  EKQG
Sbjct: 88  GDSPIRILALQNLAIHPIPDKRNCETQNKEKQG 120


>ref|XP_002297892.1| predicted protein [Populus trichocarpa] gi|222845150|gb|EEE82697.1|
           predicted protein [Populus trichocarpa]
          Length = 187

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 48/84 (57%), Positives = 59/84 (70%)
 Frame = +2

Query: 11  MAVLDQTVQVLDLSPKVTLGDLNSFFLYCGTVEKILLERKEDQSQLAYVTFRQPFALQTA 190
           MA  D T+QVL+LSP VT  +LN+FF YCGTVEKI L++ +DQ Q A VTF QP+A QTA
Sbjct: 1   MAQSDLTIQVLNLSPSVTRAELNTFFSYCGTVEKIELQKDKDQMQSALVTFTQPYAFQTA 60

Query: 191 LLLNGAFIMDNRVRILPLRSIESP 262
           LLL+ A +    +RIL    IE P
Sbjct: 61  LLLSDALLGGQPIRILSAHDIEIP 84


>gb|ABK25914.1| unknown [Picea sitchensis]
          Length = 215

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 38/72 (52%), Positives = 52/72 (72%)
 Frame = +2

Query: 23  DQTVQVLDLSPKVTLGDLNSFFLYCGTVEKILLERKEDQSQLAYVTFRQPFALQTALLLN 202
           D TVQV +LS K T+ D+  FF Y GT++K  LER     Q+A+VTF++P+A +TA+LL 
Sbjct: 3   DYTVQVCNLSTKATVKDVKQFFSYSGTIKKAKLERSGQWEQVAFVTFKEPYASETAVLLT 62

Query: 203 GAFIMDNRVRIL 238
           GA I+D RVRI+
Sbjct: 63  GATIIDQRVRIV 74


>gb|ABR17311.1| unknown [Picea sitchensis]
          Length = 245

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 33/70 (47%), Positives = 54/70 (77%)
 Frame = +2

Query: 29  TVQVLDLSPKVTLGDLNSFFLYCGTVEKILLERKEDQSQLAYVTFRQPFALQTALLLNGA 208
           TVQV++LSP  T   +  FF + GT+E + LER  +++Q+A+VTF++P+A++TA+L++GA
Sbjct: 11  TVQVMNLSPNATEQHVRDFFSHSGTIESVELERAGEEAQVAFVTFKEPYAVETAVLMSGA 70

Query: 209 FIMDNRVRIL 238
            I+D RV I+
Sbjct: 71  TIVDQRVCIV 80


Top