BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032242
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi...   171   7e-41
ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ...   147   7e-34
ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containi...   133   2e-29
ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CBI29931.3| unnamed protein product [Vitis vinifera]              122   2e-26

>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
            chloroplastic [Vitis vinifera]
            gi|302143764|emb|CBI22625.3| unnamed protein product
            [Vitis vinifera]
          Length = 880

 Score =  171 bits (432), Expect = 7e-41
 Identities = 80/114 (70%), Positives = 95/114 (83%)
 Frame = +1

Query: 1    VLEKMPFKADALIYKTLLGSCKVHKKLAIGEDMARRALELDPSDPAVYVLLANIYDDAGR 180
            V+E MPFK DALIYKTLLG+CK+H  + +GE MAR+ LELDPSDPA YVLLAN+YDD+GR
Sbjct: 679  VIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGR 738

Query: 181  SDFGDMMRQMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSL 342
            S+ G+  R+MMR RG++K PGQSWME RN VH FTAGD SHPQI  +HEKI+SL
Sbjct: 739  SELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESL 792


>ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355481230|gb|AES62433.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  147 bits (372), Expect = 7e-34
 Identities = 68/114 (59%), Positives = 94/114 (82%)
 Frame = +1

Query: 1    VLEKMPFKADALIYKTLLGSCKVHKKLAIGEDMARRALELDPSDPAVYVLLANIYDDAGR 180
            V+EKM FK D+LI KTLL +C +H  +A+GEDMARR LELDPSDPA+Y+LLAN+YD+AG 
Sbjct: 680  VIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGL 739

Query: 181  SDFGDMMRQMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSL 342
            SDFG+  R++MR RGL++ PGQ WMEIR++VHHF+AG++ +   +++ EK++ L
Sbjct: 740  SDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGEKINE--DEITEKLEFL 791


>ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
            chloroplastic-like [Glycine max]
          Length = 903

 Score =  133 bits (334), Expect = 2e-29
 Identities = 61/114 (53%), Positives = 89/114 (78%)
 Frame = +1

Query: 1    VLEKMPFKADALIYKTLLGSCKVHKKLAIGEDMARRALELDPSDPAVYVLLANIYDDAGR 180
            V+E MPFK D++IYKTLL +C +H  + +GEDMARR LELDP DPA+Y+LLA++YD+AG 
Sbjct: 682  VIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGL 741

Query: 181  SDFGDMMRQMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSL 342
             DFGD  R++MR RGL++ P Q WME+++K++ F+A  R     ++++EK++SL
Sbjct: 742  PDFGDKTRKLMRERGLRRSPRQCWMEVKSKIYLFSA--REKIGNDEINEKLESL 793


>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 989

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/113 (50%), Positives = 80/113 (70%)
 Frame = +1

Query: 4    LEKMPFKADALIYKTLLGSCKVHKKLAIGEDMARRALELDPSDPAVYVLLANIYDDAGRS 183
            +E+MP + DA+I++TLL +C VHK + IGE  AR  LEL+P D A YVLL+N+Y  +G+ 
Sbjct: 777  IEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKW 836

Query: 184  DFGDMMRQMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSL 342
            D+ D  RQMM+ RG+KK PG+SW+E++N +H F  GDR HP    ++E I  L
Sbjct: 837  DYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDL 889


>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/111 (50%), Positives = 78/111 (70%)
 Frame = +1

Query: 10  KMPFKADALIYKTLLGSCKVHKKLAIGEDMARRALELDPSDPAVYVLLANIYDDAGRSDF 189
           +MP + DA+I++TLL +C VHK + IGE  AR  LEL+P D A YVLL+N+Y  +G+ D+
Sbjct: 628 EMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDY 687

Query: 190 GDMMRQMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSL 342
            D  RQMM+ RG+KK PG+SW+E++N +H F  GDR HP    ++E I  L
Sbjct: 688 RDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDL 738