BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032203
         (897 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77045.1| hypothetical protein VITISV_035256 [Vitis vinifera]   232   3e-82
ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203...   213   1e-78
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   214   9e-78
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   218   9e-78
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  218   3e-77

>emb|CAN77045.1| hypothetical protein VITISV_035256 [Vitis vinifera]
          Length = 665

 Score =  232 bits (592), Expect(2) = 3e-82
 Identities = 114/214 (53%), Positives = 149/214 (69%)
 Frame = +3

Query: 252  VVVDIFSKMAHFITCKKTTDAVKVAQLFFRDVYRHHGLPESIVSDRDTKFLSHFWRSLWK 431
            V+VD FSKM HFI C KT DAV VA+LFF+++ R HGLP++IVSD+D KF+S+FWRSLWK
Sbjct: 445  VMVDRFSKMVHFIPCSKTLDAVHVAKLFFKEIVRLHGLPKTIVSDQDAKFMSYFWRSLWK 504

Query: 432  LVHTQLRFSSAHHPQTDGQTEVVNRSLGNLLRSLTGTSGKKWDQELFQAEFVFNRSVNRS 611
            +++T+L+FSSA HPQT+GQTEVVNRSLG+LLR L G     WDQ L  AEF +N SVNRS
Sbjct: 505  MLNTKLKFSSAFHPQTEGQTEVVNRSLGDLLRCLVGEHVSNWDQILPMAEFAYNSSVNRS 564

Query: 612  TCYSPFQIVYGFNPRSPVELAPVPDLNRVHGKAEEFITRIHDIQSEAHKHLVASTSKYKL 791
            T +SPF+IV G  PR P++L P+P   R   +A+ F   I D+  +  + +  S   YK 
Sbjct: 565  TGHSPFEIVTGLLPRKPIDLVPLPMEARPSVEADAFSKHILDLHKDVQRKIALSNENYKA 624

Query: 792  AADKHRRVVNFEVGDFVWAVLTKDRVPAGEYNKL 893
             AD  R+V +F+  D V   +  +R P G+Y KL
Sbjct: 625  QADLKRKVADFKERDMVMVWIRPERYPKGKYKKL 658



 Score =  100 bits (248), Expect(2) = 3e-82
 Identities = 42/78 (53%), Positives = 57/78 (73%)
 Frame = +2

Query: 14  HFGRDKSYKIISDSYFWPSMTKDVHRFVDRCRICQVSKGQPTNAGLYMPLSVPTRPWTDI 193
           HFGRDK+  +  D ++WPS+ +DV + V +CR CQ SKG+  N GLYMPL VP  PW ++
Sbjct: 366 HFGRDKTIAMTEDHFYWPSLKRDVTKNVSKCRTCQPSKGRKKNTGLYMPLPVPHEPWQEL 425

Query: 194 SMDFVVGLPRTQRGMDSV 247
           S+DFV+GLP+T R  DS+
Sbjct: 426 SIDFVLGLPKTFRRHDSI 443


>ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203557 [Cucumis sativus]
          Length = 1406

 Score =  213 bits (542), Expect(2) = 1e-78
 Identities = 106/187 (56%), Positives = 129/187 (68%)
 Frame = +3

Query: 252  VVVDIFSKMAHFITCKKTTDAVKVAQLFFRDVYRHHGLPESIVSDRDTKFLSHFWRSLWK 431
            VVVD FSKMAHFI CKKT DA+ +A LFFR++ R HG+P++IVSDRD KFLSHFWRSLWK
Sbjct: 1211 VVVDRFSKMAHFIPCKKTFDALNIANLFFREIVRLHGIPKTIVSDRDVKFLSHFWRSLWK 1270

Query: 432  LVHTQLRFSSAHHPQTDGQTEVVNRSLGNLLRSLTGTSGKKWDQELFQAEFVFNRSVNRS 611
               T L FS+A HPQTDGQTEV NR+LGNL+R L+G   K+WD  L QAEF FN   NRS
Sbjct: 1271 KFDTNLLFSTASHPQTDGQTEVTNRTLGNLIRCLSGDKPKQWDLALPQAEFTFNHMENRS 1330

Query: 612  TCYSPFQIVYGFNPRSPVELAPVPDLNRVHGKAEEFITRIHDIQSEAHKHLVASTSKYKL 791
            T  SPF++VY   PR   +LA +P +  V  +AE  + RI  +  E   HL  +   YK 
Sbjct: 1331 TGKSPFEVVYTSLPRVTFDLANLPSVVDVSMEAEAMVERISKLHQEVKSHLELANDSYKT 1390

Query: 792  AADKHRR 812
             A+ H+R
Sbjct: 1391 TANYHKR 1397



 Score =  107 bits (267), Expect(2) = 1e-78
 Identities = 46/78 (58%), Positives = 56/78 (71%)
 Frame = +2

Query: 14   HFGRDKSYKIISDSYFWPSMTKDVHRFVDRCRICQVSKGQPTNAGLYMPLSVPTRPWTDI 193
            HFGRDK+   IS  +FWP + +DV  F+ RC ICQ +KG   N GLY PL +P+  W D+
Sbjct: 1132 HFGRDKTLVAISSKFFWPQLNRDVTNFIKRCSICQTAKGNSQNTGLYTPLPIPSTIWEDL 1191

Query: 194  SMDFVVGLPRTQRGMDSV 247
            SMDFV+GLPRTQRG DSV
Sbjct: 1192 SMDFVLGLPRTQRGHDSV 1209


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  214 bits (545), Expect(2) = 9e-78
 Identities = 109/217 (50%), Positives = 147/217 (67%), Gaps = 3/217 (1%)
 Frame = +3

Query: 252  VVVDIFSKMAHFITCKKTTDAVKVAQLFFRDVYRHHGLPESIVSDRDTKFLSHFWRSLWK 431
            VVVD FSKMAHFI C KT DA  +A LFFR++ R HG+P +IVSDRDTKFLSHFWR+LW 
Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWA 1346

Query: 432  LVHTQLRFSSAHHPQTDGQTEVVNRSLGNLLRSLTGTSGKKWDQELFQAEFVFNRSVNRS 611
             + T+L FS+  HPQTDGQTEVVNR+L  +LR++   + K W++ L   EF +NRS++ +
Sbjct: 1347 KLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHST 1406

Query: 612  TCYSPFQIVYGFNPRSPVELAPVPDLNRVHGKAE---EFITRIHDIQSEAHKHLVASTSK 782
            T   PFQIVYG  PR+P++L P+P   +++  A+   E + ++H+   E   ++    +K
Sbjct: 1407 TKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKE---NIERMNAK 1463

Query: 783  YKLAADKHRRVVNFEVGDFVWAVLTKDRVPAGEYNKL 893
            YK A DK RR + FE GD VW  L K+R P    +KL
Sbjct: 1464 YKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKL 1500



 Score =  103 bits (256), Expect(2) = 9e-78
 Identities = 46/78 (58%), Positives = 57/78 (73%)
 Frame = +2

Query: 14   HFGRDKSYKIISDSYFWPSMTKDVHRFVDRCRICQVSKGQPTNAGLYMPLSVPTRPWTDI 193
            HFG  K++ I++  +FWP M +DV RFV RC  CQ +K +    GLYMPL VPT PW DI
Sbjct: 1208 HFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDI 1267

Query: 194  SMDFVVGLPRTQRGMDSV 247
            SMDFV+GLPRT+RG DS+
Sbjct: 1268 SMDFVLGLPRTKRGRDSI 1285



 Score =  135 bits (341), Expect(2) = 5e-45
 Identities = 82/209 (39%), Positives = 121/209 (57%), Gaps = 7/209 (3%)
 Frame = +3

Query: 252  VVVDIFSKMAHFITCKKTTDAVKVAQLFFRDVYRHHGLPESIVSDRDTKFLSHFWRSLWK 431
            VVVD  +K+A FI  K T    K+A+L+F  +   HG+P+ IVSDR+++F SHFW+ L +
Sbjct: 2109 VVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQE 2168

Query: 432  LVHTQLRFSSAHHPQTDGQTEVVNRSLGNLLRSLTGTSGKKWDQELFQAEFVFNRSVNRS 611
             + T+L FS+A+HPQTDGQTE +N+ L ++L +     GK WD+ L  AEF +N S   S
Sbjct: 2169 ELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQAS 2228

Query: 612  TCYSPFQIVYGFNPRSPVELAPVPDLNRVHGKAEEFITRIHDIQSEAH-------KHLVA 770
               +P++ +YG   R+P+    V       G+++ F T   DI  EA         +L  
Sbjct: 2229 IQMAPYEALYGRKCRTPLLWDQV-------GESQVFGT---DILREAEAKVRTIWDNLKV 2278

Query: 771  STSKYKLAADKHRRVVNFEVGDFVWAVLT 857
            + S+ K  AD  RR + F V DFV+  +T
Sbjct: 2279 AQSRQKSYADNRRRNLEFAVDDFVYLRVT 2307



 Score = 72.4 bits (176), Expect(2) = 5e-45
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +2

Query: 14   HFGRDKSYKIISDSYFWPSMTKDVHRFVDRCRICQVSKGQPTN-AGLYMPLSVPTRPWTD 190
            H G  K Y  + + Y+W SM +++  FV  C +CQ  K +    AGL  PL VP   W +
Sbjct: 2029 HPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDE 2088

Query: 191  ISMDFVVGLPRTQRGMDSV 247
            I MDF+ GLP+TQ G DS+
Sbjct: 2089 IGMDFITGLPKTQGGYDSI 2107


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  218 bits (556), Expect(2) = 9e-78
 Identities = 113/217 (52%), Positives = 148/217 (68%), Gaps = 3/217 (1%)
 Frame = +3

Query: 252  VVVDIFSKMAHFITCKKTTDAVKVAQLFFRDVYRHHGLPESIVSDRDTKFLSHFWRSLWK 431
            VVVD FSKMAHFI C K+ DAV VA LFFR++ R HG+P +IVSDRDTKFLSHFWR LW 
Sbjct: 1331 VVVDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWA 1390

Query: 432  LVHTQLRFSSAHHPQTDGQTEVVNRSLGNLLRSLTGTSGKKWDQELFQAEFVFNRSVNRS 611
             +  +L FS+  HPQTDGQTEVVNR+L  +LR++   + K W++ L   EF +NRS++ +
Sbjct: 1391 KLGNKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHST 1450

Query: 612  TCYSPFQIVYGFNPRSPVELAPVPDLNRVHGKAE---EFITRIHDIQSEAHKHLVASTSK 782
            T   PF+IVYGF PR+P++L P+P   +V+  A+   E I +IH++  E   ++    +K
Sbjct: 1451 TKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKE---NIERMNAK 1507

Query: 783  YKLAADKHRRVVNFEVGDFVWAVLTKDRVPAGEYNKL 893
            YKLA DK R+ V F  GD VW  L KDR P    +KL
Sbjct: 1508 YKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKL 1544



 Score = 99.0 bits (245), Expect(2) = 9e-78
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = +2

Query: 14   HFGRDKSYKIISDSYFWPSMTKDVHRFVDRCRICQVSKGQPTNAGLYMPLSVPTRPWTDI 193
            HFG  K+  I++  +FWP M +DV RFV RC  CQ +K +    GLYMPL VP+ PW DI
Sbjct: 1252 HFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDI 1311

Query: 194  SMDFVVGLPRTQRGMDSV 247
            SMDFV+GLPRT++G DS+
Sbjct: 1312 SMDFVLGLPRTKKGRDSI 1329


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  218 bits (554), Expect(2) = 3e-77
 Identities = 112/217 (51%), Positives = 148/217 (68%), Gaps = 3/217 (1%)
 Frame = +3

Query: 252  VVVDIFSKMAHFITCKKTTDAVKVAQLFFRDVYRHHGLPESIVSDRDTKFLSHFWRSLWK 431
            VVVD FSKMAHFI C K+ DA  VA LFFR++ R HG+P +IVSDRD KFLSHFWR LW 
Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWA 1402

Query: 432  LVHTQLRFSSAHHPQTDGQTEVVNRSLGNLLRSLTGTSGKKWDQELFQAEFVFNRSVNRS 611
             + T+L FS+  HPQTDGQTEVVNRSL  +LR++  T+ K W++ L   EF +NRS++ +
Sbjct: 1403 KLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHST 1462

Query: 612  TCYSPFQIVYGFNPRSPVELAPVPDLNRVHGKAE---EFITRIHDIQSEAHKHLVASTSK 782
            T   PF+IVYGF PR+P++L P+P   +V+  A+   E I ++H++  E   ++    ++
Sbjct: 1463 TKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKE---NIERMNAR 1519

Query: 783  YKLAADKHRRVVNFEVGDFVWAVLTKDRVPAGEYNKL 893
            YKLA DK R+ V F  GD VW  L KDR P    +KL
Sbjct: 1520 YKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKL 1556



 Score = 97.8 bits (242), Expect(2) = 3e-77
 Identities = 43/78 (55%), Positives = 55/78 (70%)
 Frame = +2

Query: 14   HFGRDKSYKIISDSYFWPSMTKDVHRFVDRCRICQVSKGQPTNAGLYMPLSVPTRPWTDI 193
            HFG  K   +++  +FWP M +DV RFV RC  CQ +K +    GLYMPL VP+ PW DI
Sbjct: 1264 HFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDI 1323

Query: 194  SMDFVVGLPRTQRGMDSV 247
            SMDFV+GLPRT++G DS+
Sbjct: 1324 SMDFVLGLPRTKKGRDSI 1341