BLASTX nr result

ID: Coptis24_contig00032202 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032202
         (525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283776.1| PREDICTED: protein VERNALIZATION INSENSITIVE...   163   2e-38
ref|XP_003544248.1| PREDICTED: protein VERNALIZATION INSENSITIVE...   114   7e-24
ref|XP_003518265.1| PREDICTED: protein VERNALIZATION INSENSITIVE...   111   6e-23
emb|CBI19277.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_004163957.1| PREDICTED: protein VERNALIZATION INSENSITIVE...   104   9e-21

>ref|XP_002283776.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis
           vinifera]
          Length = 617

 Score =  163 bits (412), Expect = 2e-38
 Identities = 88/179 (49%), Positives = 115/179 (64%), Gaps = 4/179 (2%)
 Frame = -1

Query: 525 DFLGCRIWHRKYAV-EYPEKPTYIVLRPQKRFVIPDLDPSTEYFFKISVFSKAKELGAWE 349
           +FLGCR+WHRK  + +YPEKPTYIVLRP+KRF + DL+PSTEY  K+S+FS  + LG WE
Sbjct: 360 EFLGCRLWHRKSTMKDYPEKPTYIVLRPEKRFQVTDLNPSTEYLCKVSLFSSTRVLGVWE 419

Query: 348 STCVTQAPSGCLSLGLDAEPEK-EQVITSHDTSQRDSTNSSDNKLADSDNHSKVQLSDDI 172
           +  VT + S      LD E  + E  +   + SQ DSTNSSD KL   D+  K++  DDI
Sbjct: 420 AKWVTPSLSRSSVSALDDEHRRGENTLMLQEYSQMDSTNSSDTKLVSCDHSEKLRSLDDI 479

Query: 171 --SKIDGSNVRPRDIGSVPFTGSVCVPPATPCKSDGTQEVPGSTTKKQSAESNYEYCVR 1
             +K  G ++ P  + +VP      VPP+TP K+D   EVPG  +KKQ  ES+YEY VR
Sbjct: 480 NKNKNSGFHILPPPMEAVPLLIPSSVPPSTPSKTDKMHEVPGLGSKKQIRESDYEYSVR 538


>ref|XP_003544248.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max]
          Length = 633

 Score =  114 bits (286), Expect = 7e-24
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 16/191 (8%)
 Frame = -1

Query: 525 DFLGCRIWHRKYAVEYPEKPTYIVLRPQKRFVIPDLDPSTEYFFKISVFSKAKELGA--- 355
           +FLGCR+WHR   ++YPE+PT+IVLRP+KRF + +L PSTEYF K S+FS    LGA   
Sbjct: 376 NFLGCRLWHRISTIDYPEQPTFIVLRPEKRFKLENLHPSTEYFCKASLFSSTGILGAAEA 435

Query: 354 -WESTCVTQAPSGCLSLGLDA---EPEK------EQVITSHDTSQRDSTNS--SDNKLAD 211
            W + C    PS  +S G +     P++      +       T++   T S  SD KL+ 
Sbjct: 436 KWVTPCEPSNPSKVISGGGNRFRWSPQRPSGTGVDMCTQDRITAEIHPTESANSDMKLST 495

Query: 210 SDNHSKVQLSDDI-SKIDGSNVRPRDIGSVPFTGSVCVPPATPCKSDGTQEVPGSTTKKQ 34
            ++  K  +  +I S+ +    +P+ +    +     V P+TP KS   +++PG  ++K+
Sbjct: 496 GEHPGKKHIILNIRSRFEEFLSKPQPVEPFSYKNLAAVSPSTPSKSYEMRQIPGLNSRKR 555

Query: 33  SAESNYEYCVR 1
           S E++YEY VR
Sbjct: 556 SKENDYEYSVR 566


>ref|XP_003518265.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max]
          Length = 630

 Score =  111 bits (278), Expect = 6e-23
 Identities = 69/191 (36%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
 Frame = -1

Query: 525 DFLGCRIWHRKYAVEYPEKPTYIVLRPQKRFVIPDLDPSTEYFFKISVFSKAKELGAWES 346
           +FLGCR+WHR   ++YPE+PT+IVLRP+KRF + +L PSTEYF K S+FS    LGA E+
Sbjct: 373 NFLGCRLWHRLSTMDYPEQPTFIVLRPEKRFKLENLHPSTEYFCKASLFSSTGILGAAEA 432

Query: 345 TCVTQA----PSGCLSLGLDA---EPEK------EQVITSHDTSQRDSTNS--SDNKLAD 211
           T VT      PS  ++ G +     P++           +  T++   T S  S+ KL+ 
Sbjct: 433 TWVTPCEPTNPSKVINCGGNRFRWSPQRPSGTGVNMCAQNRITAEIHPTESANSEMKLSS 492

Query: 210 SDNHSKVQLSDDI-SKIDGSNVRPRDIGSVPFTGSVCVPPATPCKSDGTQEVPGSTTKKQ 34
            ++  K  +  +I S+ +    +P+ +    +     V P+TP KS   +++PG  ++K 
Sbjct: 493 GEHPGKKHIILNIRSRFEEFLSKPQPVEPFSYKNLAAVSPSTPSKSYEMRQIPGLNSRKF 552

Query: 33  SAESNYEYCVR 1
           S E++YEY VR
Sbjct: 553 SKENDYEYSVR 563


>emb|CBI19277.3| unnamed protein product [Vitis vinifera]
          Length = 362

 Score =  105 bits (261), Expect = 5e-21
 Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 2/103 (1%)
 Frame = -1

Query: 525 DFLGCRIWHRKYAV-EYPEKPTYIVLRPQKRFVIPDLDPSTEYFFKISVFSKAKELGAWE 349
           +FLGCR+WHRK  + +YPEKPTYIVLRP+KRF + DL+PSTEY  K+S+FS  + LG WE
Sbjct: 175 EFLGCRLWHRKSTMKDYPEKPTYIVLRPEKRFQVTDLNPSTEYLCKVSLFSSTRVLGVWE 234

Query: 348 STCVTQAPSGCLSLGLDAEPEK-EQVITSHDTSQRDSTNSSDN 223
           +  VT + S      LD E  + E  +   + SQ DSTNS  +
Sbjct: 235 AKWVTPSLSRSSVSALDDEHRRGENTLMLQEYSQMDSTNSKSD 277


>ref|XP_004163957.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Cucumis
           sativus]
          Length = 619

 Score =  104 bits (259), Expect = 9e-21
 Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
 Frame = -1

Query: 525 DFLGCRIWHRKY-AVEYPEKPTYIVLRPQKRFVIPDLDPSTEYFFKISVFSKAKELGAWE 349
           DFLGCR+WHRK  A +YP++P++I L+P+K+F I DL PSTEY+ K+S+FS  +  G WE
Sbjct: 376 DFLGCRLWHRKANAKDYPDQPSFIALKPEKKFKINDLFPSTEYYCKVSLFSSIQVFGVWE 435

Query: 348 STCVT---QAPSGCLSLGLDAEPEKEQVITSHDTSQRDSTNSSDNKLADSDNHSKVQLSD 178
           +  VT     P   L      E     ++ S   S+ + TN     L   +  +K     
Sbjct: 436 AKWVTPKLSTPYPGLGKHRSGEIRTIDLLPSRVDSKGNLTN-----LHPWNGLNK----- 485

Query: 177 DISKIDGSNVRPRDIGSVPFTGSVCVPPATPCKSDGTQEVPGSTTKKQSAESNYEYCVR 1
             SK +     P    S+     + V P+TPCK+  T+ + GS  K+++ ES+Y+Y VR
Sbjct: 486 --SKWESHYKNPSPKNSITPMKPISVCPSTPCKTSETRILLGSNCKRRTEESDYDYSVR 542


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