BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032192
         (757 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263...   140   6e-34
emb|CBI36804.3| unnamed protein product [Vitis vinifera]              140   6e-34
ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putat...   138   1e-30
ref|NP_001185344.1| DNA polymerase zeta subunit [Arabidopsis tha...   126   1e-27
gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from...   126   1e-27

>ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera]
          Length = 2002

 Score =  140 bits (354), Expect(2) = 6e-34
 Identities = 91/229 (39%), Positives = 118/229 (51%), Gaps = 1/229 (0%)
 Frame = +1

Query: 4   VGIPTHYQNDGSLLYLLTTVYSPPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSPG 183
           +G+PTHYQNDGS LYLLT V+SPPS D +  WLLH                         
Sbjct: 182 MGVPTHYQNDGSFLYLLTPVFSPPSADCVHRWLLH------------------------- 216

Query: 184 GNNRLDFSKENDSFNDGKTASEPPKLQSVLADDLELIYSQEHLVNSFHEFSDKFGHV-PH 360
                         +D  T++EP  + SV                          HV P 
Sbjct: 217 --------------DDTDTSAEPLPVGSV-------------------------SHVKPV 237

Query: 361 MESSSDQLIQKDNRNSMKVNNLSEVMTERHSEGTPMKGNEHIDSCQDISQISGPDMRSKL 540
           ++  + ++   DN N+ K     +V  +   +G  MK  +  +  QDISQISGP+ +SK 
Sbjct: 238 LDQQNHEI--HDNLNAKKNAFHDKVPEKTQVKGNIMKVKKCTNCSQDISQISGPEEKSKP 295

Query: 541 TPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDASLLLLL 687
           TPLSQ GFRDPASVG GQQ+TL+SIE+QAESRGDLRPDPR DA  +++L
Sbjct: 296 TPLSQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVL 344



 Score = 29.6 bits (65), Expect(2) = 6e-34
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 669 VTVIAVRIQDDNDLGLETFVLLRGN 743
           + VI + IQ+D+D  LE FVL R N
Sbjct: 339 INVIVLLIQEDDDSALEVFVLCRSN 363


>emb|CBI36804.3| unnamed protein product [Vitis vinifera]
          Length = 1732

 Score =  140 bits (354), Expect(2) = 6e-34
 Identities = 91/229 (39%), Positives = 118/229 (51%), Gaps = 1/229 (0%)
 Frame = +1

Query: 4    VGIPTHYQNDGSLLYLLTTVYSPPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSPG 183
            +G+PTHYQNDGS LYLLT V+SPPS D +  WLLH                         
Sbjct: 768  MGVPTHYQNDGSFLYLLTPVFSPPSADCVHRWLLH------------------------- 802

Query: 184  GNNRLDFSKENDSFNDGKTASEPPKLQSVLADDLELIYSQEHLVNSFHEFSDKFGHV-PH 360
                          +D  T++EP  + SV                          HV P 
Sbjct: 803  --------------DDTDTSAEPLPVGSV-------------------------SHVKPV 823

Query: 361  MESSSDQLIQKDNRNSMKVNNLSEVMTERHSEGTPMKGNEHIDSCQDISQISGPDMRSKL 540
            ++  + ++   DN N+ K     +V  +   +G  MK  +  +  QDISQISGP+ +SK 
Sbjct: 824  LDQQNHEI--HDNLNAKKNAFHDKVPEKTQVKGNIMKVKKCTNCSQDISQISGPEEKSKP 881

Query: 541  TPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDASLLLLL 687
            TPLSQ GFRDPASVG GQQ+TL+SIE+QAESRGDLRPDPR DA  +++L
Sbjct: 882  TPLSQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVL 930



 Score = 29.6 bits (65), Expect(2) = 6e-34
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 669 VTVIAVRIQDDNDLGLETFVLLRGN 743
           + VI + IQ+D+D  LE FVL R N
Sbjct: 925 INVIVLLIQEDDDSALEVFVLCRSN 949


>ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis]
           gi|223548348|gb|EEF49839.1| DNA polymerase zeta
           catalytic subunit, putative [Ricinus communis]
          Length = 2066

 Score =  138 bits (347), Expect = 1e-30
 Identities = 91/232 (39%), Positives = 118/232 (50%)
 Frame = +1

Query: 1   VVGIPTHYQNDGSLLYLLTTVYSPPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSP 180
           ++G+PTHYQNDGSLLYLLT +YSPPS D +  WL            R +    +L   SP
Sbjct: 183 IMGVPTHYQNDGSLLYLLTPIYSPPSADCVYRWL------------RCDNEDVLLSIGSP 230

Query: 181 GGNNRLDFSKENDSFNDGKTASEPPKLQSVLADDLELIYSQEHLVNSFHEFSDKFGHVPH 360
                     E  S +  +   +   ++     ++ LI  Q                   
Sbjct: 231 ----------ETGSHDSSRVYGDNISMELRSVSNVRLIEDQ------------------- 261

Query: 361 MESSSDQLIQKDNRNSMKVNNLSEVMTERHSEGTPMKGNEHIDSCQDISQISGPDMRSKL 540
           ++    Q+I     NS    N  E+    H +    K N   +   D+SQISGP+ RS+ 
Sbjct: 262 VQQEEHQII-----NSEFHPNTDELQRPLHHKENNAKLNACTECSIDLSQISGPNERSRP 316

Query: 541 TPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDASLLLLLEFK 696
           TPLSQ GFRDPAS GAGQQLT++SIEVQAESRGDLRPDPR DA   + L F+
Sbjct: 317 TPLSQIGFRDPASTGAGQQLTMLSIEVQAESRGDLRPDPRFDAINTVALAFQ 368


>ref|NP_001185344.1| DNA polymerase zeta subunit [Arabidopsis thaliana]
            gi|332196535|gb|AEE34656.1| DNA polymerase zeta subunit
            [Arabidopsis thaliana]
          Length = 1916

 Score =  126 bits (316), Expect(2) = 1e-27
 Identities = 87/235 (37%), Positives = 120/235 (51%), Gaps = 7/235 (2%)
 Frame = +1

Query: 4    VGIPTHYQNDGSLLYLLTTVYSPPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSPG 183
            +GIP H+ NDGS LYLLT  +SPPSVDS+ +W+ +                         
Sbjct: 911  LGIPLHHLNDGSNLYLLTPAFSPPSVDSVLQWISNDK----------------------- 947

Query: 184  GNNRLDFSKE--NDSFND-GKTASEPPKLQSVLADDLELIYSQEHLVNSFHEFSDKFGHV 354
            G++ +D  K+   D+ ND G + ++       LA    ++   EH+              
Sbjct: 948  GDSNIDSEKQPLRDNHNDRGASFTD-------LASASNVVSVSEHV-------------- 986

Query: 355  PHMESSSDQLIQKDNRNSMKVNNLSEVMTERHSE----GTPMKGNEHIDSCQDISQISGP 522
                         +  N++ VN+ S   TE   +    GT +  N      Q++SQISGP
Sbjct: 987  -------------EQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGP 1033

Query: 523  DMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDASLLLLL 687
            D +S  TPLSQ GFRDPAS+GAGQQLT++SIEV AESRGDLRPDPR D+  ++ L
Sbjct: 1034 DGKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIAL 1088



 Score = 23.5 bits (49), Expect(2) = 1e-27
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 669  VTVIAVRIQDDNDLGLETFVLL 734
            V VIA+ +Q+D+    E FVLL
Sbjct: 1083 VNVIALVVQNDDSFVAEVFVLL 1104


>gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from S. cerevisiae
            [Arabidopsis thaliana]
          Length = 1894

 Score =  126 bits (316), Expect(2) = 1e-27
 Identities = 87/235 (37%), Positives = 120/235 (51%), Gaps = 7/235 (2%)
 Frame = +1

Query: 4    VGIPTHYQNDGSLLYLLTTVYSPPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSPG 183
            +GIP H+ NDGS LYLLT  +SPPSVDS+ +W+ +                         
Sbjct: 889  LGIPLHHLNDGSNLYLLTPAFSPPSVDSVLQWISNDK----------------------- 925

Query: 184  GNNRLDFSKE--NDSFND-GKTASEPPKLQSVLADDLELIYSQEHLVNSFHEFSDKFGHV 354
            G++ +D  K+   D+ ND G + ++       LA    ++   EH+              
Sbjct: 926  GDSNIDSEKQPLRDNHNDRGASFTD-------LASASNVVSVSEHV-------------- 964

Query: 355  PHMESSSDQLIQKDNRNSMKVNNLSEVMTERHSE----GTPMKGNEHIDSCQDISQISGP 522
                         +  N++ VN+ S   TE   +    GT +  N      Q++SQISGP
Sbjct: 965  -------------EQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGP 1011

Query: 523  DMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDASLLLLL 687
            D +S  TPLSQ GFRDPAS+GAGQQLT++SIEV AESRGDLRPDPR D+  ++ L
Sbjct: 1012 DGKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIAL 1066



 Score = 23.5 bits (49), Expect(2) = 1e-27
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 669  VTVIAVRIQDDNDLGLETFVLL 734
            V VIA+ +Q+D+    E FVLL
Sbjct: 1061 VNVIALVVQNDDSFVAEVFVLL 1082