BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032169
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   141   5e-32
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...   139   3e-31
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...   138   5e-31
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              137   1e-30
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   137   1e-30

>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  141 bits (356), Expect = 5e-32
 Identities = 72/105 (68%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 VMSSDISVSILRKVLKQVEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRD 135
           VMSSD+S+S+L+KVLKQVEIIKSSRSG PNFESH+VE  DLQS V +Y   RGTAK +RD
Sbjct: 231 VMSSDLSISMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARD 290

Query: 134 I-KMSGIRKEVGGYATKAWFEKMKTFFISKGSGYSSRSVITGDAY 3
           + +  G+ KE    +TKAW EKM+T FI KGSG+SSRSVITGDAY
Sbjct: 291 VGERFGVHKESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAY 335


>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2098

 Score =  139 bits (349), Expect = 3e-31
 Identities = 70/105 (66%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 VMSSDISVSILRKVLKQVEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRD 135
           VMSSD S++ILRK+L++VEIIKSSRSG PNFESH VE NDLQS V +YF  RGT+K +RD
Sbjct: 233 VMSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARD 292

Query: 134 IKMS-GIRKEVGGYATKAWFEKMKTFFISKGSGYSSRSVITGDAY 3
           I+   G+ KE+   +TKAW EKM+T FI KGSG+SSR+VITGD Y
Sbjct: 293 IETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCY 337


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2020

 Score =  138 bits (347), Expect = 5e-31
 Identities = 70/105 (66%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 VMSSDISVSILRKVLKQVEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRD 135
           VMSSD S++ILRK+L++VEIIKSSRSG PNFESH VE NDLQS V +YF  RGT+K +RD
Sbjct: 233 VMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARD 292

Query: 134 IKMS-GIRKEVGGYATKAWFEKMKTFFISKGSGYSSRSVITGDAY 3
           I+   G+ KE+   +TKAW EKM+T FI KGSG+SSR+VITGD Y
Sbjct: 293 IETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCY 337


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/105 (64%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 VMSSDISVSILRKVLKQVEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRD 135
           +MSSD+SVS+L+KVLKQ+E+IK SRSG PNFESHK+E N+LQS++ +Y   RGTAK SR 
Sbjct: 289 IMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRS 348

Query: 134 IKMS-GIRKEVGGYATKAWFEKMKTFFISKGSGYSSRSVITGDAY 3
           +    G  KE    +TKAW EKM+T FI KGSG+SSRSVITGDAY
Sbjct: 349 LDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAY 393


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/105 (64%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 VMSSDISVSILRKVLKQVEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRD 135
           +MSSD+SVS+L+KVLKQ+E+IK SRSG PNFESHK+E N+LQS++ +Y   RGTAK SR 
Sbjct: 229 IMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRS 288

Query: 134 IKMS-GIRKEVGGYATKAWFEKMKTFFISKGSGYSSRSVITGDAY 3
           +    G  KE    +TKAW EKM+T FI KGSG+SSRSVITGDAY
Sbjct: 289 LDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAY 333