BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032167
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
emb|CBI19955.3| unnamed protein product [Vitis vinifera]              110   9e-23
ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea m...   103   1e-20
gb|AER41579.1| CRR4 [Oryza brachyantha]                               101   7e-20

>ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  110 bits (276), Expect = 9e-23
 Identities = 52/86 (60%), Positives = 65/86 (75%)
 Frame = -1

Query: 260 GKEIHAHVMKLGFGYSVFVQNALLDFYCKCSESFEFSRRVFDEMIERDVVSWNSMMGAYM 81
           G+ IH  ++KLGFG SVFVQN+LL FY  CSE+   + RVF+EM ERDV+SWNSM+ AYM
Sbjct: 93  GRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYM 152

Query: 80  ANGEKVLAMELFDTMPERSIVSWNSM 3
             GE   A+ L D MPER+IV+WNS+
Sbjct: 153 TRGEIQSAIGLLDKMPERNIVTWNSV 178


>emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  110 bits (276), Expect = 9e-23
 Identities = 52/86 (60%), Positives = 65/86 (75%)
 Frame = -1

Query: 260 GKEIHAHVMKLGFGYSVFVQNALLDFYCKCSESFEFSRRVFDEMIERDVVSWNSMMGAYM 81
           G+ IH  ++KLGFG SVFVQN+LL FY  CSE+   + RVF+EM ERDV+SWNSM+ AYM
Sbjct: 29  GRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYM 88

Query: 80  ANGEKVLAMELFDTMPERSIVSWNSM 3
             GE   A+ L D MPER+IV+WNS+
Sbjct: 89  TRGEIQSAIGLLDKMPERNIVTWNSV 114


>ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 588

 Score =  104 bits (259), Expect = 9e-21
 Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
 Frame = -1

Query: 257 KEIHAHVMKLGFGYSVFVQNALLDFYCKCSESFEF--SRRVFDEMIERDVVSWNSMMGAY 84
           + IH  ++K GFG  V VQNALLD Y KCS       +R+VFDEMIE+DV+SWNS++G Y
Sbjct: 123 RRIHGQILKCGFGRDVVVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVY 182

Query: 83  MANGEKVLAMELFDTMPERSIVSWNSM 3
           M++G+   AMELF+ MPER++VSWN++
Sbjct: 183 MSSGDVKGAMELFEVMPERNVVSWNTV 209



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/52 (48%), Positives = 36/52 (69%)
 Frame = -1

Query: 158 EFSRRVFDEMIERDVVSWNSMMGAYMANGEKVLAMELFDTMPERSIVSWNSM 3
           E +R +F +  ++DVVSW +M+ AY   G   LA ELFD MP +++VSWN+M
Sbjct: 251 EAARSIFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAM 302


>tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
          Length = 590

 Score =  103 bits (257), Expect = 1e-20
 Identities = 47/85 (55%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
 Frame = -1

Query: 251 IHAHVMKLGFGYSVFVQNALLDFYCKCSESFE--FSRRVFDEMIERDVVSWNSMMGAYMA 78
           +H  +++ GFG  V VQNALL+ Y KCS+  +   +R+VFDEM  RDVVSWNS++G YM+
Sbjct: 137 VHGQIVRCGFGSDVVVQNALLNVYYKCSDPGDVGIARQVFDEMANRDVVSWNSIVGVYMS 196

Query: 77  NGEKVLAMELFDTMPERSIVSWNSM 3
           NG+   AMELF+ MPER++VSWN++
Sbjct: 197 NGDAAGAMELFEAMPERNVVSWNTI 221


>gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  101 bits (251), Expect = 7e-20
 Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
 Frame = -1

Query: 251 IHAHVMKLGFGYSVFVQNALLDFYCKCSESFEFS--RRVFDEMIERDVVSWNSMMGAYMA 78
           +H  +++ GFG  VFVQN LLD Y +C      +  R+VFDEM++RDVVSWNS++G YM+
Sbjct: 127 VHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMS 186

Query: 77  NGEKVLAMELFDTMPERSIVSWNSM 3
           +G+   AMELF+ MPER++VSWN++
Sbjct: 187 SGDYTGAMELFEAMPERNVVSWNTL 211