BLASTX nr result

ID: Coptis24_contig00032098 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032098
         (250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316491.1| cationic amino acid transporter [Populus tri...    91   1e-16
ref|XP_002515785.1| cationic amino acid transporter, putative [R...    82   4e-14
ref|XP_002269556.1| PREDICTED: high affinity cationic amino acid...    80   2e-13
ref|XP_003637200.1| High affinity cationic amino acid transporte...    77   2e-12
ref|XP_003555221.1| PREDICTED: low affinity cationic amino acid ...    76   2e-12

>ref|XP_002316491.1| cationic amino acid transporter [Populus trichocarpa]
           gi|222865531|gb|EEF02662.1| cationic amino acid
           transporter [Populus trichocarpa]
          Length = 600

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 42/59 (71%), Positives = 51/59 (86%)
 Frame = +3

Query: 24  MEQTHGSSFSSIRAYGQALIQTPKRVLHRAGSVSTSYDEMSRIRARSGSNMQKTLRWFD 200
           ME +HGSSFSS+ +Y QAL QTP R   RAGSVSTSY+EMSR++ARSGS+MQ+TLRW+D
Sbjct: 1   MESSHGSSFSSLNSYIQALAQTPARFARRAGSVSTSYEEMSRVKARSGSDMQRTLRWYD 59


>ref|XP_002515785.1| cationic amino acid transporter, putative [Ricinus communis]
           gi|223545113|gb|EEF46624.1| cationic amino acid
           transporter, putative [Ricinus communis]
          Length = 576

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 42/59 (71%), Positives = 48/59 (81%)
 Frame = +3

Query: 24  MEQTHGSSFSSIRAYGQALIQTPKRVLHRAGSVSTSYDEMSRIRARSGSNMQKTLRWFD 200
           ME  H SSFSS R+Y QAL QTP R+  RAGSVSTSY+EMSR++ARSGS MQK+LRW D
Sbjct: 1   MEIGHVSSFSSFRSYLQALGQTPTRLACRAGSVSTSYEEMSRVKARSGSEMQKSLRWHD 59


>ref|XP_002269556.1| PREDICTED: high affinity cationic amino acid transporter 1 [Vitis
           vinifera]
          Length = 586

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  THGSS-FSSIRAYGQALIQTPKRVLHRAGSVSTSYDEMSRIRARSGSNMQKTLRWFD 200
           THGSS FSS  AY +AL QTP R+  RA SVSTS++EMSR+RARSGS+MQ+ LRWFD
Sbjct: 3   THGSSSFSSFTAYARALAQTPSRLARRACSVSTSFEEMSRVRARSGSDMQRNLRWFD 59


>ref|XP_003637200.1| High affinity cationic amino acid transporter [Medicago truncatula]
           gi|355503135|gb|AES84338.1| High affinity cationic amino
           acid transporter [Medicago truncatula]
          Length = 623

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/56 (64%), Positives = 46/56 (82%)
 Frame = +3

Query: 33  THGSSFSSIRAYGQALIQTPKRVLHRAGSVSTSYDEMSRIRARSGSNMQKTLRWFD 200
           +HGSSFSS+  Y QA+ +TP R   R  SVSTSY+EMSR+RARSG++M+K+LRWFD
Sbjct: 3   SHGSSFSSLPNYLQAVAKTPSRFARRGFSVSTSYEEMSRVRARSGNSMRKSLRWFD 58


>ref|XP_003555221.1| PREDICTED: low affinity cationic amino acid transporter 2-like
           [Glycine max]
          Length = 587

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 42  SSFSSIRAYGQALIQTPKRVLHRAGSVSTSYDEMSRIRARSGSNMQKTLRWFD 200
           SSFSS+RAY  AL  TP R+  RA SVSTSYDEMS++RARSG++M+KTLRWFD
Sbjct: 9   SSFSSLRAYLSALSHTPTRLALRALSVSTSYDEMSQVRARSGTSMRKTLRWFD 61


Top