BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032055
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   209   2e-52
emb|CBI19766.3| unnamed protein product [Vitis vinifera]              209   2e-52
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi...   199   2e-49
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...   199   2e-49
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar...   196   1e-48

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  209 bits (531), Expect = 2e-52
 Identities = 98/140 (70%), Positives = 115/140 (82%)
 Frame = -2

Query: 421 LNNGMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGG 242
           L  GMELH++ VK+    D+L+GNSLID+YSK G+LE AR +FDMIL+KDV+TWN+MIGG
Sbjct: 372 LKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGG 431

Query: 241 YTQAGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKR 62
           Y QAGY GKAYDLF +M +S V PNV+TWN MISGYI+ GDEDQAMDLF RME DG  KR
Sbjct: 432 YCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKR 491

Query: 61  NVASWNSLISGLLQNGQKNK 2
           + ASWNSLI+G LQNG KNK
Sbjct: 492 DTASWNSLIAGYLQNGHKNK 511



 Score =  104 bits (259), Expect = 9e-21
 Identities = 47/137 (34%), Positives = 86/137 (62%)
 Frame = -2

Query: 412 GMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQ 233
           G  +H+L ++     ++ + NS++ +Y+KCG L  AR  F+ +  +D  +WN++I GY Q
Sbjct: 204 GKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQ 263

Query: 232 AGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNVA 53
            G   K++ LF +MQ+  + P ++TWN++I+ Y + G  D AM+L ++ME+      +V 
Sbjct: 264 KGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVP-DVF 322

Query: 52  SWNSLISGLLQNGQKNK 2
           +W S+ISG  QN ++++
Sbjct: 323 TWTSMISGFAQNNRRSQ 339



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
 Frame = -2

Query: 352 NSLIDIYSKCGDLEGARSIFDMILEKDV----FTWNTMIGGYTQAGYFGKAYDLFTRMQD 185
           NS+I  Y + G+LE +  +F+ + E+ +     TWN +I  Y+Q+G    A +L  +M+ 
Sbjct: 255 NSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMES 314

Query: 184 SAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNV 56
             + P+V TW  MISG+ +     QA++LF+ M   G     V
Sbjct: 315 FRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGV 357



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/132 (28%), Positives = 67/132 (50%)
 Frame = -2

Query: 406 ELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAG 227
           E+H   ++     ++ + N LID Y+K G++  A++IF  I  KD+ +WN++I GY   G
Sbjct: 549 EIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHG 608

Query: 226 YFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNVASW 47
               A DLF +M    V P+  T+  +I  +   G  D+   +F  M  D      +   
Sbjct: 609 CSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHH 668

Query: 46  NSLISGLLQNGQ 11
           +++I  L ++G+
Sbjct: 669 SAMIDLLGRSGK 680


>emb|CBI19766.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  209 bits (531), Expect = 2e-52
 Identities = 98/140 (70%), Positives = 115/140 (82%)
 Frame = -2

Query: 421 LNNGMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGG 242
           L  GMELH++ VK+    D+L+GNSLID+YSK G+LE AR +FDMIL+KDV+TWN+MIGG
Sbjct: 26  LKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGG 85

Query: 241 YTQAGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKR 62
           Y QAGY GKAYDLF +M +S V PNV+TWN MISGYI+ GDEDQAMDLF RME DG  KR
Sbjct: 86  YCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKR 145

Query: 61  NVASWNSLISGLLQNGQKNK 2
           + ASWNSLI+G LQNG KNK
Sbjct: 146 DTASWNSLIAGYLQNGHKNK 165



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/132 (28%), Positives = 67/132 (50%)
 Frame = -2

Query: 406 ELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAG 227
           E+H   ++     ++ + N LID Y+K G++  A++IF  I  KD+ +WN++I GY   G
Sbjct: 203 EIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHG 262

Query: 226 YFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNVASW 47
               A DLF +M    V P+  T+  +I  +   G  D+   +F  M  D      +   
Sbjct: 263 CSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHH 322

Query: 46  NSLISGLLQNGQ 11
           +++I  L ++G+
Sbjct: 323 SAMIDLLGRSGK 334


>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  199 bits (506), Expect = 2e-49
 Identities = 93/140 (66%), Positives = 111/140 (79%)
 Frame = -2

Query: 421 LNNGMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGG 242
           L NG+E+H   +K+    + L+GNSLID+YSKCG LE AR +FD ILEKDV+TWN+MIGG
Sbjct: 367 LQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGG 426

Query: 241 YTQAGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKR 62
           Y QAGY GKAY+LF R+++S V PNV+TWN MISG I+ GDEDQAMDLFQ ME DG  KR
Sbjct: 427 YCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKR 486

Query: 61  NVASWNSLISGLLQNGQKNK 2
           N ASWNSLI+G  Q G+KNK
Sbjct: 487 NTASWNSLIAGYHQLGEKNK 506



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/131 (35%), Positives = 75/131 (57%)
 Frame = -2

Query: 403 LHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAGY 224
           +H+L ++   +  + L NS++  + KCG L  AR  F  + E+D  +WN MI GY Q G 
Sbjct: 202 IHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGN 261

Query: 223 FGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNVASWN 44
             +A  L   M +    P ++T+N+MI+ Y + GD D  +DL ++ME+ G    +V +W 
Sbjct: 262 GDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAP-DVYTWT 320

Query: 43  SLISGLLQNGQ 11
           S+ISG  Q+ +
Sbjct: 321 SMISGFSQSSR 331



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 32/104 (30%), Positives = 59/104 (56%)
 Frame = -2

Query: 406 ELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAG 227
           E+H   ++     ++ + NSL+D Y+K G+++ +R++F+ +  KD+ TWN++I GY   G
Sbjct: 544 EIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHG 603

Query: 226 YFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLF 95
               A+ LF +M++  + PN  T   +I  Y   G  D+   +F
Sbjct: 604 CSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVF 647


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  199 bits (506), Expect = 2e-49
 Identities = 93/140 (66%), Positives = 111/140 (79%)
 Frame = -2

Query: 421 LNNGMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGG 242
           L NG+E+H   +K+    + L+GNSLID+YSKCG LE AR +FD ILEKDV+TWN+MIGG
Sbjct: 367 LQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGG 426

Query: 241 YTQAGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKR 62
           Y QAGY GKAY+LF R+++S V PNV+TWN MISG I+ GDEDQAMDLFQ ME DG  KR
Sbjct: 427 YCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKR 486

Query: 61  NVASWNSLISGLLQNGQKNK 2
           N ASWNSLI+G  Q G+KNK
Sbjct: 487 NTASWNSLIAGYHQLGEKNK 506



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/131 (35%), Positives = 75/131 (57%)
 Frame = -2

Query: 403 LHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAGY 224
           +H+L ++   +  + L NS++  + KCG L  AR  F  + E+D  +WN MI GY Q G 
Sbjct: 202 IHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGN 261

Query: 223 FGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNVASWN 44
             +A  L   M +    P ++T+N+MI+ Y + GD D  +DL ++ME+ G    +V +W 
Sbjct: 262 GDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAP-DVYTWT 320

Query: 43  SLISGLLQNGQ 11
           S+ISG  Q+ +
Sbjct: 321 SMISGFSQSSR 331



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 32/104 (30%), Positives = 59/104 (56%)
 Frame = -2

Query: 406 ELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAG 227
           E+H   ++     ++ + NSL+D Y+K G+++ +R++F+ +  KD+ TWN++I GY   G
Sbjct: 544 EIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHG 603

Query: 226 YFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLF 95
               A+ LF +M++  + PN  T   +I  Y   G  D+   +F
Sbjct: 604 CSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVF 647


>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
           gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
           [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 894

 Score =  196 bits (499), Expect = 1e-48
 Identities = 87/140 (62%), Positives = 113/140 (80%)
 Frame = -2

Query: 421 LNNGMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGG 242
           +N G E+H++ VK+    DVL+GNSL+D+YSKCG LE AR +FD +  KDV+TWN+MI G
Sbjct: 368 INQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITG 427

Query: 241 YTQAGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKR 62
           Y QAGY GKAY+LFTRMQD+ + PN+ITWN MISGYI+ GDE +AMDLFQRME DG  +R
Sbjct: 428 YCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQR 487

Query: 61  NVASWNSLISGLLQNGQKNK 2
           N A+WN +I+G +QNG+K++
Sbjct: 488 NTATWNLIIAGYIQNGKKDE 507



 Score =  109 bits (273), Expect = 2e-22
 Identities = 50/135 (37%), Positives = 85/135 (62%)
 Frame = -2

Query: 412 GMELHALGVKLRSTGDVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQ 233
           G  +H++ +KL  +  + + NS++ +Y+KCG+L+ A   F  + E+DV  WN+++  Y Q
Sbjct: 200 GKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQ 259

Query: 232 AGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEADGTTKRNVA 53
            G   +A +L   M+   ++P ++TWN++I GY + G  D AMDL Q+ME  G T  +V 
Sbjct: 260 NGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGIT-ADVF 318

Query: 52  SWNSLISGLLQNGQK 8
           +W ++ISGL+ NG +
Sbjct: 319 TWTAMISGLIHNGMR 333



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
 Frame = -2

Query: 406 ELHALGVKLRSTGDVL--LGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQ 233
           E+H  G  LR   D +  + N+L D Y+K GD+E +R+IF  +  KD+ TWN++IGGY  
Sbjct: 545 EIH--GCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVL 602

Query: 232 AGYFGKAYDLFTRMQDSAVTPNVITWNVMISGYIRKGDEDQAMDLFQRMEAD 77
            G +G A  LF +M+   +TPN  T + +I  +   G+ D+   +F  +  D
Sbjct: 603 HGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIAND 654



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 35/154 (22%)
 Frame = -2

Query: 367 DVLLGNSLIDIYSKCGDLEGARSIFDMILEKDVFTWNTMIGGYTQAGYFGKAYDLFTRMQ 188
           DV +   L+ +Y+KCG +  AR +FD + E+++FTW+ MIG Y++   + +   LF  M 
Sbjct: 114 DVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMM 173

Query: 187 DSAVTPNVITW-----------------------------------NVMISGYIRKGDED 113
              V P+   +                                   N +++ Y + G+ D
Sbjct: 174 KDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELD 233

Query: 112 QAMDLFQRMEADGTTKRNVASWNSLISGLLQNGQ 11
            A   F+RM      +R+V +WNS++    QNG+
Sbjct: 234 FATKFFRRMR-----ERDVIAWNSVLLAYCQNGK 262