BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032054
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...   136   2e-30
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi...   130   8e-29
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...   130   8e-29
ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi...   128   5e-28

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  140 bits (353), Expect = 1e-31
 Identities = 70/100 (70%), Positives = 81/100 (81%)
 Frame = +3

Query: 3   ILIASYNQMGNSDVALELMKKMESHGIAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           ILI SY+Q G  D A+ELMKKMES  I PDVFTWTSMISG AQN R +QALELFREM+LA
Sbjct: 291 ILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLA 350

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELHALGVKLRSMGD 302
           G+EPNGVT+ S +SACASLKAL  GMELH++ VK+  + D
Sbjct: 351 GIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVED 390



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 6   LIASYNQMGNSDVALELMKKMESHG-IAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           +I+ Y Q G+ D A++L  +ME  G I  D  +W S+I+G  QN   N+AL +FR+M   
Sbjct: 463 MISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSF 522

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELH 269
            + PN VT+ S + ACA+L A     E+H
Sbjct: 523 CIRPNSVTMLSILPACANLVAAKKVKEIH 551


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score =  136 bits (342), Expect = 2e-30
 Identities = 68/100 (68%), Positives = 81/100 (81%)
 Frame = +3

Query: 3   ILIASYNQMGNSDVALELMKKMESHGIAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           ILIA YNQ+G  D+A+ELMKKME  G +PDV TWTSMISG AQN + ++AL LF +M+LA
Sbjct: 280 ILIAGYNQLGYFDIAMELMKKMEVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDMILA 339

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELHALGVKLRSMGD 302
            VEPNGVTI+SAVSACASLK LN G+E+HAL VKL  + D
Sbjct: 340 RVEPNGVTISSAVSACASLKVLNEGLEIHALAVKLGFVED 379



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = +3

Query: 6   LIASYNQMGNSDVALELMKKMESHG-IAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           +I  Y   G+ D A++L ++ME  G I  D  +W S+ISG  Q  + ++AL +FR+M   
Sbjct: 452 MIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQMQSF 511

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELHALGVK 284
            +  N VTI S + ACA+L AL    E+H   ++
Sbjct: 512 SININSVTILSVLPACANLIALKMVKEIHGCVIR 545


>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  130 bits (328), Expect = 8e-29
 Identities = 59/95 (62%), Positives = 81/95 (85%)
 Frame = +3

Query: 3   ILIASYNQMGNSDVALELMKKMESHGIAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           I+IASY+Q+G+ D+ ++L KKMES G+APDV+TWTSMISG +Q+ R +QAL+ F++M+LA
Sbjct: 286 IMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILA 345

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELHALGVKL 287
           GVEPN +TIASA SACASLK+L NG+E+H   +K+
Sbjct: 346 GVEPNTITIASATSACASLKSLQNGLEIHCFAIKM 380



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = +3

Query: 6   LIASYNQMGNSDVALELMKKMESHG-IAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           +I+   Q G+ D A++L + ME  G +  +  +W S+I+G  Q    N+AL +FR+M   
Sbjct: 458 MISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSL 517

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELH 269
              PN VTI S + ACA++ A     E+H
Sbjct: 518 NFSPNSVTILSILPACANVMAEKKIKEIH 546


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  130 bits (328), Expect = 8e-29
 Identities = 59/95 (62%), Positives = 81/95 (85%)
 Frame = +3

Query: 3   ILIASYNQMGNSDVALELMKKMESHGIAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           I+IASY+Q+G+ D+ ++L KKMES G+APDV+TWTSMISG +Q+ R +QAL+ F++M+LA
Sbjct: 286 IMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILA 345

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELHALGVKL 287
           GVEPN +TIASA SACASLK+L NG+E+H   +K+
Sbjct: 346 GVEPNTITIASATSACASLKSLQNGLEIHCFAIKM 380



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = +3

Query: 6   LIASYNQMGNSDVALELMKKMESHG-IAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           +I+   Q G+ D A++L + ME  G +  +  +W S+I+G  Q    N+AL +FR+M   
Sbjct: 458 MISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSL 517

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELH 269
              PN VTI S + ACA++ A     E+H
Sbjct: 518 NFSPNSVTILSILPACANVMAEKKIKEIH 546


>ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  128 bits (321), Expect = 5e-28
 Identities = 59/100 (59%), Positives = 80/100 (80%)
 Frame = +3

Query: 3   ILIASYNQMGNSDVALELMKKMESHGIAPDVFTWTSMISGCAQNKRTNQALELFREMVLA 182
           ILIASY+Q+G+ D+A++LM+KMES GI PDV+TWTSMISG  Q  R N+A +L R+M++ 
Sbjct: 290 ILIASYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIV 349

Query: 183 GVEPNGVTIASAVSACASLKALNNGMELHALGVKLRSMGD 302
           GVEPN +TIASA SACAS+K+L+ G E+H++ VK   + D
Sbjct: 350 GVEPNSITIASAASACASVKSLSMGSEIHSIAVKTSMVDD 389



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
 Frame = +3

Query: 3   ILIASYNQMGNSDVALELMKKMESHG-IAPDVFTWTSMISGCAQNKRTNQALELFREMVL 179
           ++I  + Q G+ D AL L  ++E  G I P+V +W S+ISG  QN++ ++AL++FR+M  
Sbjct: 461 VMITGFMQNGDEDEALNLFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQF 520

Query: 180 AGVEPNGVTIASAVSACASLKALNNGMELHALGVK 284
           + + PN VT+ + + AC +L A     E+H    +
Sbjct: 521 SNMAPNLVTVLTILPACTNLVAAKKVKEIHCCATR 555