BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00032014
         (1160 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   573   e-161
tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea m...   487   e-135
ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containi...   478   e-132
gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japo...   473   e-131
ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containi...   418   e-114

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
            [Vitis vinifera]
          Length = 640

 Score =  573 bits (1477), Expect = e-161
 Identities = 277/386 (71%), Positives = 329/386 (85%)
 Frame = +2

Query: 2    RDLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIV 181
            RDL+SWSSMIA YAK+RQSNEAL LFH+MQ ANV PD+VTMVSVLSACGD+GALGMGK++
Sbjct: 231  RDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMI 290

Query: 182  HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFG 361
            HE I+RN++EID+KLGTSLVDMYAKCGDI+NSL+VFNGM  +DVF WSA+I+GLANHGFG
Sbjct: 291  HECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFG 350

Query: 362  EHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGC 541
            E ALD+F+KMI   IKPN +TFIGVLSACSH+GLVD GWTYFTSM+  Y V+PKIEHYGC
Sbjct: 351  ELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGC 410

Query: 542  MVDLLGRMAHLREARELIRNMPFAPDAIVWRTFLSACKIHKNMELAEEATVNLLELEPHM 721
            +VD+LGR   L+EA ELI++MPFAPDAIVWR  L AC+I+KN+E+AEEATVNLLELEPH+
Sbjct: 411  VVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHV 470

Query: 722  DGNYVLLSNMYAQDKKWXXXXXXXXXXXXKNIHKIPGSSSIEVDNVVYEFIAGDRSHPKS 901
            DGNYVLLSN+Y+Q K+W             NI K+PGSSSIEVDN V+EF+AGD+SHP+S
Sbjct: 471  DGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPES 530

Query: 902  KEIYEMLAEMIDRLYIVGYKPLISSVLQDMNDKAKEHALAYHSEKLAFAFGLLSIAPGSP 1081
            K+I  ML+E+  RL   GY PL +SVLQD ++K KE+ALA+HSEKLA AFGLLS APGS 
Sbjct: 531  KKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGST 590

Query: 1082 IRIVKNLRVCEDCHLAFKLLSVIYER 1159
            IRIVKNLRVC+DCH+A KL+S  Y+R
Sbjct: 591  IRIVKNLRVCDDCHIAIKLISRTYKR 616



 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 63/220 (28%)
 Frame = +2

Query: 5   DLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRP-DRVTMVSVLSACGDLGALGMGKIV 181
           D   W++MI  Y  S+   E++ LF  M+     P D  ++  V+ ACG L   G G+ +
Sbjct: 68  DTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKL 127

Query: 182 HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKV------------------------- 286
           H  + +  +  D+ + T+L++MYAK GDIE +  +                         
Sbjct: 128 HTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEI 187

Query: 287 ------FNGMGVKDVFTWSAVIIGLANHG------------------------------- 355
                 F+ M  +D+ +W+ +I G A+ G                               
Sbjct: 188 NLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKAR 247

Query: 356 FGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRG 475
               AL  F +M    + P+ +T + VLSAC  VG +  G
Sbjct: 248 QSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG 287


>tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  487 bits (1254), Expect = e-135
 Identities = 230/386 (59%), Positives = 299/386 (77%)
 Frame = +2

Query: 2    RDLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIV 181
            RD  SWSSM++ Y K R+S +AL L+ +M++A V PD  TMVSVLSAC D+GAL +G  V
Sbjct: 166  RDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEV 225

Query: 182  HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFG 361
            H++++ N VE+DVKLGT+L+DMYAKCGDIENS++VF+ M VKDV TWS++IIGLANHGFG
Sbjct: 226  HQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFG 285

Query: 362  EHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGC 541
              AL  F++M+  G++PN +TFIGVL +C+H+GLV  G  YF+SM+  +GVTPK++HYGC
Sbjct: 286  HDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGC 345

Query: 542  MVDLLGRMAHLREARELIRNMPFAPDAIVWRTFLSACKIHKNMELAEEATVNLLELEPHM 721
            MVDLLGR  H+ EA++LIR+MPF PDA++WR  L AC+I+KN+E+AEEA   L  L+PH 
Sbjct: 346  MVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHA 405

Query: 722  DGNYVLLSNMYAQDKKWXXXXXXXXXXXXKNIHKIPGSSSIEVDNVVYEFIAGDRSHPKS 901
            DG+YVLLSN+YAQ   W            + I +IPG SSIE  N ++EFI+GDRSHP+S
Sbjct: 406  DGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRS 465

Query: 902  KEIYEMLAEMIDRLYIVGYKPLISSVLQDMNDKAKEHALAYHSEKLAFAFGLLSIAPGSP 1081
            KEIY+ML EM+DRL   GYKP+   VLQD+++++KE ALA HSEKLA AFGLL+   GS 
Sbjct: 466  KEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGST 525

Query: 1082 IRIVKNLRVCEDCHLAFKLLSVIYER 1159
            +RI KNLR CEDCH A KL++++YER
Sbjct: 526  LRITKNLRACEDCHSAIKLIALLYER 551



 Score = 60.5 bits (145), Expect = 8e-07
 Identities = 46/219 (21%), Positives = 101/219 (46%)
 Frame = +2

Query: 5   DLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVH 184
           DL   ++++  YAK+ +++ A   F +    +V    V + + ++     G +   + V 
Sbjct: 74  DLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTR----GEVAEARRVF 129

Query: 185 EYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFGE 364
           + +     E D+    +++  YA  G+++ + +VFNGM  +D F+WS+++         +
Sbjct: 130 DGMR----ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSK 185

Query: 365 HALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGCM 544
            AL+ + +M    + P+  T + VLSACS +G +  G        +  GV   ++    +
Sbjct: 186 DALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG-AEVHQFVESNGVELDVKLGTAL 244

Query: 545 VDLLGRMAHLREARELIRNMPFAPDAIVWRTFLSACKIH 661
           +D+  +   +  +  +  +MP   D + W + +     H
Sbjct: 245 IDMYAKCGDIENSVRVFHSMP-VKDVLTWSSMIIGLANH 282


>ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like
            [Brachypodium distachyon]
          Length = 585

 Score =  478 bits (1230), Expect = e-132
 Identities = 233/386 (60%), Positives = 294/386 (76%)
 Frame = +2

Query: 2    RDLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIV 181
            RD  SWSSMI+ YAK R S EAL L+ +M+ A V PD ++MVSVLSAC  +GAL +G  V
Sbjct: 176  RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235

Query: 182  HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFG 361
            H +++ N+VE+D+KLGT+LVDMYAKCGDIENSLKVF+ M VKDV TWS++IIGLANHG G
Sbjct: 236  HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLG 295

Query: 362  EHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGC 541
              AL  F++MI  G++PN ITFIGVL AC+HVGLV+ G  YF+SM+D +GV P++EHYGC
Sbjct: 296  HDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGC 355

Query: 542  MVDLLGRMAHLREARELIRNMPFAPDAIVWRTFLSACKIHKNMELAEEATVNLLELEPHM 721
            MVDLLGR  H+ EA ELIR+M F PD I+WRT L AC+IHKN+E+AEEA   L  L+P  
Sbjct: 356  MVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLA 415

Query: 722  DGNYVLLSNMYAQDKKWXXXXXXXXXXXXKNIHKIPGSSSIEVDNVVYEFIAGDRSHPKS 901
            DG+YVLLSN+YAQ   W            +NI ++PG SSIE +N V+EF++GDRSHP+ 
Sbjct: 416  DGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRI 475

Query: 902  KEIYEMLAEMIDRLYIVGYKPLISSVLQDMNDKAKEHALAYHSEKLAFAFGLLSIAPGSP 1081
            +EIY+ML EM+DRL   GY+P+ S VLQD+++++K+ ALA HSEKLA AFGLL     S 
Sbjct: 476  EEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARST 535

Query: 1082 IRIVKNLRVCEDCHLAFKLLSVIYER 1159
            +RI KNLR CEDCH A KL+S+ Y+R
Sbjct: 536  LRITKNLRACEDCHSAIKLISLAYDR 561



 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 35/149 (23%), Positives = 72/149 (48%)
 Frame = +2

Query: 215 DVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFGEHALDYFAKMI 394
           D+    +++  YA  GD+  + ++F+G   +D F+WS++I   A     + AL+ + +M 
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205

Query: 395 YGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGCMVDLLGRMAHL 574
             G+ P+ I+ + VLSACS +G +  G      + +   V   ++    +VD+  +   +
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFV-ESNRVEVDMKLGTALVDMYAKCGDI 264

Query: 575 REARELIRNMPFAPDAIVWRTFLSACKIH 661
             + ++   MP   D + W + +     H
Sbjct: 265 ENSLKVFHAMP-VKDVLTWSSMIIGLANH 292


>gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  473 bits (1216), Expect = e-131
 Identities = 225/386 (58%), Positives = 291/386 (75%)
 Frame = +2

Query: 2    RDLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIV 181
            RD  SWSSMI+ YAKSR+S EAL L+ +M +A++ PD +T+VSV+SAC DLGAL +G  V
Sbjct: 83   RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEV 142

Query: 182  HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFG 361
            H +++ N++E+D+KLGT+L+DMYAKCGDIE++ +VF+ M  KDV TWS++IIGLANHG G
Sbjct: 143  HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLG 202

Query: 362  EHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGC 541
              +L  F+KMI  G+KPNG+TF+GVL AC+HVGLV  G  YF SMN+ +G+ P +EHYGC
Sbjct: 203  HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC 262

Query: 542  MVDLLGRMAHLREARELIRNMPFAPDAIVWRTFLSACKIHKNMELAEEATVNLLELEPHM 721
            MVDLLGR  H+ EAR+LIR+M F PD I+WR  L AC+IHKN+E+AEEA   L  L+P  
Sbjct: 263  MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLG 322

Query: 722  DGNYVLLSNMYAQDKKWXXXXXXXXXXXXKNIHKIPGSSSIEVDNVVYEFIAGDRSHPKS 901
            DG+YVLLSN+YAQ   W             NI +IPG SSIE D  ++EF++GDR HP+S
Sbjct: 323  DGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRS 382

Query: 902  KEIYEMLAEMIDRLYIVGYKPLISSVLQDMNDKAKEHALAYHSEKLAFAFGLLSIAPGSP 1081
            KEIY +L EM+DRL   GYKP+   VLQD+++++KE +LA HSEKLA AF LL+    S 
Sbjct: 383  KEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARST 442

Query: 1082 IRIVKNLRVCEDCHLAFKLLSVIYER 1159
            IRI KNLR CEDCH A KL+S++Y+R
Sbjct: 443  IRITKNLRACEDCHSAMKLISLVYDR 468


>ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic [Vitis vinifera]
          Length = 711

 Score =  418 bits (1074), Expect = e-114
 Identities = 209/386 (54%), Positives = 269/386 (69%)
 Frame = +2

Query: 2    RDLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIV 181
            ++L  W+ MI G+ +     EAL LF++MQ + V+ D+VTM S+L AC  LGAL +GK +
Sbjct: 302  KNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWL 361

Query: 182  HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFG 361
            H YI++ K+E+DV LGT+LVDMYAKCG IE++++VF  M  KDV TW+A+I+GLA  G G
Sbjct: 362  HVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQG 421

Query: 362  EHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFTSMNDKYGVTPKIEHYGC 541
              AL+ F +M    +KP+ ITF+GVL+ACSH GLV+ G  YF SM +KYG+ P IEHYGC
Sbjct: 422  LKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGC 481

Query: 542  MVDLLGRMAHLREARELIRNMPFAPDAIVWRTFLSACKIHKNMELAEEATVNLLELEPHM 721
            MVD+LGR   + EA +LI+NMP APD  V    LSAC+IH N+ +AE A   L+EL+P  
Sbjct: 482  MVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKN 541

Query: 722  DGNYVLLSNMYAQDKKWXXXXXXXXXXXXKNIHKIPGSSSIEVDNVVYEFIAGDRSHPKS 901
             G YVLLSN+Y+  K W            +NI K PG S+IEV  VV+EF+ GD SHP+S
Sbjct: 542  GGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQS 601

Query: 902  KEIYEMLAEMIDRLYIVGYKPLISSVLQDMNDKAKEHALAYHSEKLAFAFGLLSIAPGSP 1081
             EIYE L +M+ RL   GY P  S VL DM++K KE+ L+ HSEKLA AFGLLS  PG+P
Sbjct: 602  SEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTP 661

Query: 1082 IRIVKNLRVCEDCHLAFKLLSVIYER 1159
            IR+VKNLRVC DCH A K +S +Y R
Sbjct: 662  IRVVKNLRVCSDCHSAMKFISEVYNR 687



 Score =  118 bits (295), Expect = 3e-24
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 1/215 (0%)
 Frame = +2

Query: 2   RDLVSWSSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIV 181
           + +VSW++MI  YA+    +EA+ LF  M+ A+V+P+ +T+V+VL+AC     L   K V
Sbjct: 201 KSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQV 260

Query: 182 HEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFG 361
           H+YID   +     L ++L+D+Y KCG    +  +FN M  K++F W+ +I G       
Sbjct: 261 HKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDY 320

Query: 362 EHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRG-WTYFTSMNDKYGVTPKIEHYG 538
           E AL  F +M   G+K + +T   +L AC+H+G ++ G W +     +K  V   +    
Sbjct: 321 EEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALG--T 378

Query: 539 CMVDLLGRMAHLREARELIRNMPFAPDAIVWRTFL 643
            +VD+  +   +  A  + + MP   D + W   +
Sbjct: 379 ALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALI 412



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 44/144 (30%), Positives = 74/144 (51%)
 Frame = +2

Query: 20  SSMIAGYAKSRQSNEALILFHDMQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDR 199
           +S+I GY       +A++ +  M    + PDR T  S+  +CG    L  GK +H +  +
Sbjct: 109 NSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTK 165

Query: 200 NKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKDVFTWSAVIIGLANHGFGEHALDY 379
                D  +  +L++MY+ CG + ++ KVF+ M  K V +W+ +I   A       A+  
Sbjct: 166 LGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKL 225

Query: 380 FAKMIYGGIKPNGITFIGVLSACS 451
           F +M    +KPN IT + VL+AC+
Sbjct: 226 FRRMEIASVKPNEITLVNVLTACA 249