BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031996
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putativ...    77   1e-12
ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent R...    77   2e-12
ref|NP_176514.1| putative DEAD-box ATP-dependent RNA helicase 48...    75   4e-12
ref|XP_002298050.1| predicted protein [Populus trichocarpa] gi|2...    74   9e-12
ref|NP_178818.1| putative DEAD-box ATP-dependent RNA helicase 33...    74   2e-11

>ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 771

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 37/72 (51%), Positives = 45/72 (62%)
 Frame = +3

Query: 12  QKKPITNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHAR 191
           + K +++ L      R MGGGPRTFPGGLNKWQW                +QEKQLY AR
Sbjct: 11  RSKTVSDHLQTRIFTRLMGGGPRTFPGGLNKWQWKRLHEKRAKEKEKSLLEQEKQLYQAR 70

Query: 192 IRTQIRAKVAGE 227
           IR+QIR+K+AGE
Sbjct: 71  IRSQIRSKLAGE 82


>ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like
           [Vitis vinifera] gi|297742558|emb|CBI34707.3| unnamed
           protein product [Vitis vinifera]
          Length = 754

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 37/67 (55%), Positives = 42/67 (62%)
 Frame = +3

Query: 27  TNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHARIRTQI 206
           + LL  F   R MGGGPRTFPGG+NKWQW                D EKQLY ARIR+QI
Sbjct: 14  SKLLCTFFFARPMGGGPRTFPGGINKWQWKRLHEKKAREKEKRLLDHEKQLYEARIRSQI 73

Query: 207 RAKVAGE 227
           RAK+AG+
Sbjct: 74  RAKLAGK 80


>ref|NP_176514.1| putative DEAD-box ATP-dependent RNA helicase 48 [Arabidopsis
           thaliana] gi|75333533|sp|Q9C8S9.1|RH48_ARATH RecName:
           Full=Probable DEAD-box ATP-dependent RNA helicase 48
           gi|12324351|gb|AAG52143.1|AC022355_4 putative RNA
           helicase; 42376-45543 [Arabidopsis thaliana]
           gi|332195955|gb|AEE34076.1| putative DEAD-box
           ATP-dependent RNA helicase 48 [Arabidopsis thaliana]
          Length = 798

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/67 (58%), Positives = 41/67 (61%)
 Frame = +3

Query: 24  ITNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHARIRTQ 203
           IT  L N    R MGGGPRTFPGGLNKWQW                DQEKQLY ARIRT+
Sbjct: 13  ITGSLWNRISSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTE 72

Query: 204 IRAKVAG 224
           IRAK+ G
Sbjct: 73  IRAKMWG 79


>ref|XP_002298050.1| predicted protein [Populus trichocarpa] gi|222845308|gb|EEE82855.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 35/72 (48%), Positives = 43/72 (59%)
 Frame = +3

Query: 12  QKKPITNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHAR 191
           + K ++  L      R MGGGPRTFPGGLNKWQW                DQEKQLY AR
Sbjct: 8   RSKSLSEQLRTRIFIRLMGGGPRTFPGGLNKWQWKRLHEKKAKEKEKRLLDQEKQLYQAR 67

Query: 192 IRTQIRAKVAGE 227
           +R+ IR+K+AG+
Sbjct: 68  MRSNIRSKLAGQ 79


>ref|NP_178818.1| putative DEAD-box ATP-dependent RNA helicase 33 [Arabidopsis
           thaliana] gi|75318697|sp|O80792.1|RH33_ARATH RecName:
           Full=Putative DEAD-box ATP-dependent RNA helicase 33
           gi|3327394|gb|AAC26676.1| putative RNA helicase
           [Arabidopsis thaliana] gi|330251036|gb|AEC06130.1|
           putative DEAD-box ATP-dependent RNA helicase 33
           [Arabidopsis thaliana]
          Length = 845

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/63 (58%), Positives = 39/63 (61%)
 Frame = +3

Query: 36  LSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHARIRTQIRAK 215
           L N    R MGGGPRTFPGGLNKWQW                DQEKQLY ARIRT+IRAK
Sbjct: 67  LWNRIFSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAK 126

Query: 216 VAG 224
           + G
Sbjct: 127 MWG 129