BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031777
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containi...    75   7e-12
emb|CBI28142.3| unnamed protein product [Vitis vinifera]               75   7e-12
ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containi...    69   5e-10
ref|XP_002529360.1| pentatricopeptide repeat-containing protein,...    67   2e-09
ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containi...    65   8e-09

>ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -1

Query: 177 TKEEILVHIQNCKSIREIKQVYSQIFRTGFSQNRDTLQKFMGICTNPDTGNLNYAERIF 1
           TK+  +  ++NCKS++ +KQ+ +QI RTGF Q+ DTL KFM  CT+P  GNL+YAERIF
Sbjct: 31  TKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIF 89


>emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -1

Query: 177 TKEEILVHIQNCKSIREIKQVYSQIFRTGFSQNRDTLQKFMGICTNPDTGNLNYAERIF 1
           TK+  +  ++NCKS++ +KQ+ +QI RTGF Q+ DTL KFM  CT+P  GNL+YAERIF
Sbjct: 31  TKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIF 89


>ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 28/64 (43%), Positives = 45/64 (70%)
 Frame = -1

Query: 192 KVTRVTKEEILVHIQNCKSIREIKQVYSQIFRTGFSQNRDTLQKFMGICTNPDTGNLNYA 13
           +++++TK+  +  ++NCKS+ ++KQ+ SQIFR G   +RDT+ K M  C +   GNL YA
Sbjct: 137 RISKLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYA 196

Query: 12  ERIF 1
           E+IF
Sbjct: 197 EKIF 200


>ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531180|gb|EEF33027.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 683

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
 Frame = -1

Query: 207 KFST--QKVTRVTKEEILVHIQNCKSIREIKQVYSQIFRTGFSQNRDTLQKFMGICTNPD 34
           KFST     T ++++  + ++++CKS+  +KQ+++QIFR G  Q+  +L K M  CT+P 
Sbjct: 24  KFSTFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPF 83

Query: 33  TGNLNYAERIF 1
            GNLNYAE++F
Sbjct: 84  NGNLNYAEKMF 94


>ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
 Frame = -1

Query: 228 PVYCYLRKFSTQKVTRV--TKEEILVHIQNCKSIREIKQVYSQIFRTGFSQNRDTLQKFM 55
           P + +   FS+   + +   K+  +  ++NCKS+ ++KQ+ SQIFR G   +RDT+ K M
Sbjct: 77  PSFFFKPPFSSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLM 136

Query: 54  GICTNPDTGNLNYAERIF 1
             C +   GNL YAE+IF
Sbjct: 137 AFCADSSLGNLRYAEKIF 154