BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031657
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12
ref|NP_188131.1| pentatricopeptide repeat-containing protein [Ar...    76   3e-12
dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]         76   3e-12
gb|ABR17838.1| unknown [Picea sitchensis]                              75   7e-12
ref|XP_002964412.1| hypothetical protein SELMODRAFT_81698 [Selag...    74   1e-11

>ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/102 (38%), Positives = 54/102 (52%)
 Frame = -3

Query: 306 LFQSCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXXXKN 127
           +  SC  L SV QG  IH      G+D ++ VG+A++DMY +CG              KN
Sbjct: 523 MINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKN 582

Query: 126 IVTWNTMLSGYVKSGHSAMVLDLFRHLQCENQHRPDPVTMIS 1
           IV WN M+ GY ++G     +DLF ++    Q RPD VT I+
Sbjct: 583 IVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQ-RPDGVTFIA 623


>ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546753|sp|P0C898.1|PP232_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g15130 gi|332642102|gb|AEE75623.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 689

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = -3

Query: 300 QSCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXXXKNIV 121
           ++CG L ++++G  IHG+C   GF+  + VGN+++DMY +CG              ++++
Sbjct: 115 KACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLI 174

Query: 120 TWNTMLSGYVKSGHSAMVLDLFRHLQCEN-QHRPDPVTMIS 1
           +WN M++G+V +G+ +  LD F  +Q  N + RPD  T+ S
Sbjct: 175 SWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTS 215


>dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = -3

Query: 300 QSCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXXXKNIV 121
           ++CG L ++++G  IHG+C   GF+  + VGN+++DMY +CG              ++++
Sbjct: 486 KACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLI 545

Query: 120 TWNTMLSGYVKSGHSAMVLDLFRHLQCEN-QHRPDPVTMIS 1
           +WN M++G+V +G+ +  LD F  +Q  N + RPD  T+ S
Sbjct: 546 SWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTS 586


>gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/105 (35%), Positives = 58/105 (55%)
 Frame = -3

Query: 315 MLMLFQSCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXX 136
           M+ +  +C  L +++QG  IHGY    GF+S+  VGNA+++MY +CG             
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384

Query: 135 XKNIVTWNTMLSGYVKSGHSAMVLDLFRHLQCENQHRPDPVTMIS 1
            KN+V WN ++SGY + GH    L LF  +Q +   +PD   ++S
Sbjct: 385 KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG-IKPDSFAIVS 428



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/104 (27%), Positives = 55/104 (52%)
 Frame = -3

Query: 312 LMLFQSCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXXX 133
           L + ++CG    ++ G  +H    ++GF+S + VG A+  MY +CG              
Sbjct: 124 LSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPK 183

Query: 132 KNIVTWNTMLSGYVKSGHSAMVLDLFRHLQCENQHRPDPVTMIS 1
           +++V+WN +++GY ++G     L LF  +Q  N  +P+  T++S
Sbjct: 184 RDVVSWNAIIAGYSQNGQPYEALALFSEMQV-NGIKPNSSTLVS 226



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 47/91 (51%)
 Frame = -3

Query: 315 MLMLFQSCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXX 136
           ++ +  +C    +++QG  IHGY    GF+S++ VG  ++D+Y +CG             
Sbjct: 426 IVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP 485

Query: 135 XKNIVTWNTMLSGYVKSGHSAMVLDLFRHLQ 43
            +++V+W TM+  Y   GH    L LF  +Q
Sbjct: 486 EQDVVSWTTMILAYGIHGHGEDALALFSKMQ 516


>ref|XP_002964412.1| hypothetical protein SELMODRAFT_81698 [Selaginella moellendorffii]
           gi|300168141|gb|EFJ34745.1| hypothetical protein
           SELMODRAFT_81698 [Selaginella moellendorffii]
          Length = 504

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 31/99 (31%), Positives = 55/99 (55%)
 Frame = -3

Query: 297 SCGELGSVKQGTIIHGYCCSKGFDSHLTVGNAMMDMYIRCGXXXXXXXXXXXXXXKNIVT 118
           +CG+   ++ G +IHG    KG +S + VG A+++MY +CG              +++V 
Sbjct: 192 ACGDPAMLRHGKVIHGMAGEKGLESDMVVGTALVNMYSKCGEIEQAKVVFDRMIQRDVVL 251

Query: 117 WNTMLSGYVKSGHSAMVLDLFRHLQCENQHRPDPVTMIS 1
           W  M+ GY ++G   +  DLFR +Q ++  RP+ VT ++
Sbjct: 252 WTAMIGGYAENGQPRLAFDLFRQMQQQSSVRPNRVTYLT 290