BLASTX nr result

ID: Coptis24_contig00031534 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031534
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529182.1| multidrug resistance protein 1, 2, putative ...   177   1e-42
ref|XP_003632759.1| PREDICTED: ABC transporter B family member 1...   176   1e-42
emb|CBI35827.3| unnamed protein product [Vitis vinifera]              176   1e-42
ref|XP_002331205.1| multidrug/pheromone exporter, MDR family, AB...   175   3e-42
ref|XP_003627370.1| ABC transporter B family member [Medicago tr...   162   3e-38

>ref|XP_002529182.1| multidrug resistance protein 1, 2, putative [Ricinus communis]
            gi|223531360|gb|EEF33196.1| multidrug resistance protein
            1, 2, putative [Ricinus communis]
          Length = 1580

 Score =  177 bits (448), Expect = 1e-42
 Identities = 89/140 (63%), Positives = 107/140 (76%)
 Frame = +1

Query: 1    VGLIISFSLDWKLDXXXXXXTPFTLGASYCSLIINIGPKLNNTSYXXXXXXXXXXXXXXX 180
            VGL +SF L+W+L       TPFTLGASY SLIIN+GPKL+N+SY               
Sbjct: 1144 VGLGMSFFLEWRLTLLAAALTPFTLGASYLSLIINVGPKLDNSSYAKASNIAAGAVSNIR 1203

Query: 181  TVMTFSAQQQLVSSFDQALSEPRRKSMKRSQILGLALGFSQGSMYAAYTLTLWFGAYQVK 360
            TV TFSAQ+Q+V SFD+AL EP++KS++RSQ+LGL LGFSQG+MY AYTLTLWFGAY VK
Sbjct: 1204 TVTTFSAQEQIVRSFDRALDEPKKKSVRRSQVLGLTLGFSQGAMYGAYTLTLWFGAYLVK 1263

Query: 361  KRETSFGEVYKIFLILVLSS 420
            + +T FG+VYKIFLILVLSS
Sbjct: 1264 QGKTDFGDVYKIFLILVLSS 1283


>ref|XP_003632759.1| PREDICTED: ABC transporter B family member 19-like [Vitis vinifera]
          Length = 1542

 Score =  176 bits (447), Expect = 1e-42
 Identities = 89/140 (63%), Positives = 107/140 (76%)
 Frame = +1

Query: 1    VGLIISFSLDWKLDXXXXXXTPFTLGASYCSLIINIGPKLNNTSYXXXXXXXXXXXXXXX 180
            VGL ISF LDW+L       TP TLGASY SLIIN+GP+L+N+SY               
Sbjct: 1106 VGLGISFFLDWRLTLLAAALTPLTLGASYFSLIINVGPRLDNSSYARASNIAAGAVSNIR 1165

Query: 181  TVMTFSAQQQLVSSFDQALSEPRRKSMKRSQILGLALGFSQGSMYAAYTLTLWFGAYQVK 360
            TV TFSAQQQLV +FDQALSEP++KS+KRSQ+LGLALGFSQG+MY AYTLTLWFG Y +K
Sbjct: 1166 TVTTFSAQQQLVHTFDQALSEPKKKSVKRSQVLGLALGFSQGAMYGAYTLTLWFGTYLIK 1225

Query: 361  KRETSFGEVYKIFLILVLSS 420
            + + +FG+V+KIFLILV+SS
Sbjct: 1226 EDKANFGDVFKIFLILVMSS 1245


>emb|CBI35827.3| unnamed protein product [Vitis vinifera]
          Length = 1140

 Score =  176 bits (447), Expect = 1e-42
 Identities = 89/140 (63%), Positives = 107/140 (76%)
 Frame = +1

Query: 1    VGLIISFSLDWKLDXXXXXXTPFTLGASYCSLIINIGPKLNNTSYXXXXXXXXXXXXXXX 180
            VGL ISF LDW+L       TP TLGASY SLIIN+GP+L+N+SY               
Sbjct: 737  VGLGISFFLDWRLTLLAAALTPLTLGASYFSLIINVGPRLDNSSYARASNIAAGAVSNIR 796

Query: 181  TVMTFSAQQQLVSSFDQALSEPRRKSMKRSQILGLALGFSQGSMYAAYTLTLWFGAYQVK 360
            TV TFSAQQQLV +FDQALSEP++KS+KRSQ+LGLALGFSQG+MY AYTLTLWFG Y +K
Sbjct: 797  TVTTFSAQQQLVHTFDQALSEPKKKSVKRSQVLGLALGFSQGAMYGAYTLTLWFGTYLIK 856

Query: 361  KRETSFGEVYKIFLILVLSS 420
            + + +FG+V+KIFLILV+SS
Sbjct: 857  EDKANFGDVFKIFLILVMSS 876


>ref|XP_002331205.1| multidrug/pheromone exporter, MDR family, ABC transporter family
            [Populus trichocarpa] gi|222873326|gb|EEF10457.1|
            multidrug/pheromone exporter, MDR family, ABC transporter
            family [Populus trichocarpa]
          Length = 1547

 Score =  175 bits (444), Expect = 3e-42
 Identities = 90/140 (64%), Positives = 105/140 (75%)
 Frame = +1

Query: 1    VGLIISFSLDWKLDXXXXXXTPFTLGASYCSLIINIGPKLNNTSYXXXXXXXXXXXXXXX 180
            VGL +SF L W+L       TPFTLGASY SLIIN+GPKL+N+SY               
Sbjct: 1111 VGLGLSFYLQWRLALLAAALTPFTLGASYLSLIINVGPKLDNSSYAKASTIAAGAVSSIR 1170

Query: 181  TVMTFSAQQQLVSSFDQALSEPRRKSMKRSQILGLALGFSQGSMYAAYTLTLWFGAYQVK 360
            TV TFSAQ Q+V SFD+AL+EP++KS+KRSQ+LGL LGFSQG+MY AYTLTLWFGAY VK
Sbjct: 1171 TVATFSAQDQIVESFDRALAEPKKKSVKRSQVLGLTLGFSQGAMYGAYTLTLWFGAYLVK 1230

Query: 361  KRETSFGEVYKIFLILVLSS 420
            + ET+ G VYKIFLILVLSS
Sbjct: 1231 QGETNIGVVYKIFLILVLSS 1250


>ref|XP_003627370.1| ABC transporter B family member [Medicago truncatula]
            gi|355521392|gb|AET01846.1| ABC transporter B family
            member [Medicago truncatula]
          Length = 1488

 Score =  162 bits (409), Expect = 3e-38
 Identities = 83/140 (59%), Positives = 98/140 (70%)
 Frame = +1

Query: 1    VGLIISFSLDWKLDXXXXXXTPFTLGASYCSLIINIGPKLNNTSYXXXXXXXXXXXXXXX 180
            VGL +SF  +W+L       TP TLGASY +LIINIGPK+NN SY               
Sbjct: 1052 VGLGVSFVFNWELTLVAAAVTPLTLGASYINLIINIGPKINNNSYARASNIASGAVSNIR 1111

Query: 181  TVMTFSAQQQLVSSFDQALSEPRRKSMKRSQILGLALGFSQGSMYAAYTLTLWFGAYQVK 360
            TV TFSAQ+Q+V++FD+ALSEPR+KS+K SQ+ GL  G  QG+MYAAYTLTLWFGAY VK
Sbjct: 1112 TVATFSAQEQIVNAFDKALSEPRKKSLKSSQLQGLVFGLFQGAMYAAYTLTLWFGAYLVK 1171

Query: 361  KRETSFGEVYKIFLILVLSS 420
                 F +VYKIFLILVLSS
Sbjct: 1172 NNRGDFDDVYKIFLILVLSS 1191


Top