BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031499
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24313.3| unnamed protein product [Vitis vinifera]              163   1e-38
ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi...   163   1e-38
ref|XP_002523226.1| pentatricopeptide repeat-containing protein,...   157   1e-36
ref|XP_002868306.1| pentatricopeptide repeat-containing protein ...   147   1e-33
ref|NP_193153.3| pentatricopeptide repeat-containing protein [Ar...   141   6e-32

>emb|CBI24313.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  163 bits (413), Expect = 1e-38
 Identities = 75/115 (65%), Positives = 95/115 (82%)
 Frame = -3

Query: 345 YFDMMKDYRVVAGLKNYASLVDCLGKAGLIAEAERFVKEMPMEPDAAVLGALLGGCRIHG 166
           YF+MMK+Y V   LK+YA +VDCLG+AG++ +AERF++EMP+E D AVLGALLGGCR+HG
Sbjct: 286 YFEMMKEYGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVEADGAVLGALLGGCRVHG 345

Query: 165 NIEVGERVANKLLKLEPDEGGYYMLLANMYADSGRYNDAEKVRDFMKQRSASKVP 1
           N EVGERVA KL+ LEP++   Y++LAN+YA +GR+ DAEKVR  MKQR  SKVP
Sbjct: 346 NAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVP 400


>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  163 bits (413), Expect = 1e-38
 Identities = 75/115 (65%), Positives = 95/115 (82%)
 Frame = -3

Query: 345 YFDMMKDYRVVAGLKNYASLVDCLGKAGLIAEAERFVKEMPMEPDAAVLGALLGGCRIHG 166
           YF+MMK+Y V   LK+YA +VDCLG+AG++ +AERF++EMP+E D AVLGALLGGCR+HG
Sbjct: 334 YFEMMKEYGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVEADGAVLGALLGGCRVHG 393

Query: 165 NIEVGERVANKLLKLEPDEGGYYMLLANMYADSGRYNDAEKVRDFMKQRSASKVP 1
           N EVGERVA KL+ LEP++   Y++LAN+YA +GR+ DAEKVR  MKQR  SKVP
Sbjct: 394 NAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVP 448


>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 488

 Score =  157 bits (396), Expect = 1e-36
 Identities = 68/117 (58%), Positives = 98/117 (83%)
 Frame = -3

Query: 351 REYFDMMKDYRVVAGLKNYASLVDCLGKAGLIAEAERFVKEMPMEPDAAVLGALLGGCRI 172
           R YF MM++Y +VA L++YA++VDCL +AG   EAE+F+ ++PMEPD AVLGA+L GCR+
Sbjct: 361 RSYFKMMQNYGLVAELRHYATIVDCLARAGRFEEAEKFISDIPMEPDEAVLGAILAGCRV 420

Query: 171 HGNIEVGERVANKLLKLEPDEGGYYMLLANMYADSGRYNDAEKVRDFMKQRSASKVP 1
           H N+EVGER+A +L++L+P++ GYY+LLANMYA  GR+++AE VRD M++++ SKVP
Sbjct: 421 HNNVEVGERIAKRLIRLKPEKAGYYVLLANMYAGVGRFHEAEMVRDSMQEKNMSKVP 477


>ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314142|gb|EFH44565.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 458

 Score =  147 bits (370), Expect = 1e-33
 Identities = 62/115 (53%), Positives = 95/115 (82%)
 Frame = -3

Query: 345 YFDMMKDYRVVAGLKNYASLVDCLGKAGLIAEAERFVKEMPMEPDAAVLGALLGGCRIHG 166
           Y  +M++Y++V  LK+YAS+ DC+ +AGL+ EAE+F+++MP+EPD AVLGA+L GC+++G
Sbjct: 339 YLRLMQEYKIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVEPDEAVLGAVLSGCKVYG 398

Query: 165 NIEVGERVANKLLKLEPDEGGYYMLLANMYADSGRYNDAEKVRDFMKQRSASKVP 1
           N+EVGERVA KL++LEP +G YY+ LA +Y+ +GR+++AE +R  MK++  SKVP
Sbjct: 399 NVEVGERVARKLIQLEPRKGSYYVTLAGLYSAAGRFDEAESLRQLMKEKQISKVP 453


>ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14170 gi|332657989|gb|AEE83389.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  141 bits (355), Expect = 6e-32
 Identities = 58/115 (50%), Positives = 95/115 (82%)
 Frame = -3

Query: 345 YFDMMKDYRVVAGLKNYASLVDCLGKAGLIAEAERFVKEMPMEPDAAVLGALLGGCRIHG 166
           YF +M++Y +V  LK+YAS+ DC+ +AGL+ EAE+F+++MP++PD AV+GA+L GC+++G
Sbjct: 358 YFRLMQEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYG 417

Query: 165 NIEVGERVANKLLKLEPDEGGYYMLLANMYADSGRYNDAEKVRDFMKQRSASKVP 1
           N+EVGERVA +L++L+P +  YY+ LA +Y+ +GR+++AE +R +MK++  SKVP
Sbjct: 418 NVEVGERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAESLRQWMKEKQISKVP 472