BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031474
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322139.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_002511477.1| pentatricopeptide repeat-containing protein,...    87   2e-15
ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containi...    82   5e-14
ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containi...    82   5e-14

>ref|XP_002322139.1| predicted protein [Populus trichocarpa] gi|222869135|gb|EEF06266.1|
           predicted protein [Populus trichocarpa]
          Length = 866

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 56/93 (60%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
 Frame = -2

Query: 259 MSSSLPISKTPPISTLSKLTFNPKPLFSLPFH-------SKTKILSHSFKTRAKPRELIL 101
           +S SL I    PIST S    +  P   LP H       S  K  S ++K RAKP+EL+L
Sbjct: 3   LSPSLSIPSPSPISTKSIKAKHTFPFPILPSHRRLVSFSSDRKAYSGAWKARAKPKELVL 62

Query: 100 GNPSVTVEKGKYSYDVETLINKLSSLPPRGSIA 2
           GNPSV VEKGKYSYDVETLINKLSSLPPRGSIA
Sbjct: 63  GNPSVVVEKGKYSYDVETLINKLSSLPPRGSIA 95


>ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 54/96 (56%), Positives = 65/96 (67%), Gaps = 10/96 (10%)
 Frame = -2

Query: 259 MSSSLPISKTPPISTL--SKLTFNPKP-----LF---SLPFHSKTKILSHSFKTRAKPRE 110
           +S SL IS +   + L  S +   P P     LF   +  F    +IL+ + + RAKP+E
Sbjct: 3   LSPSLLISSSTSATLLRPSHVNLRPNPNLNRHLFPAKATDFFGYQRILASAARIRAKPKE 62

Query: 109 LILGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIA 2
           L+LGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIA
Sbjct: 63  LVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIA 98


>ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550592|gb|EEF52079.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 754

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 53/95 (55%), Positives = 64/95 (67%), Gaps = 8/95 (8%)
 Frame = -2

Query: 262 LMSSSLPISKTPPISTLSKLTFNPKPLFSLPFHSKT--------KILSHSFKTRAKPREL 107
           ++S SL +S   P+ T + L  N KP   LP+ ++         K  S + K RAK +EL
Sbjct: 2   ILSPSLSLSNPSPLYT-NLLKPNLKPNL-LPYPNRRLISLSGDRKTYSGAAKARAKTKEL 59

Query: 106 ILGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIA 2
           +LGNPSV VEKGKYSYDVETLINKLSSLPPRGSIA
Sbjct: 60  VLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIA 94


>ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 49/91 (53%), Positives = 58/91 (63%)
 Frame = -2

Query: 274 TQMTLMSSSLPISKTPPISTLSKLTFNPKPLFSLPFHSKTKILSHSFKTRAKPRELILGN 95
           T  T     L   + P +S LS   F+ +  F   F    ++ S   K RAK ++L+LGN
Sbjct: 15  TPSTFQKRYLECQQLPFLSKLSN--FSVRRRF---FSDDWRLSSDVGKVRAKAKDLVLGN 69

Query: 94  PSVTVEKGKYSYDVETLINKLSSLPPRGSIA 2
           PSV VEKGKYSYDVETLINKLSSLPPRGSIA
Sbjct: 70  PSVIVEKGKYSYDVETLINKLSSLPPRGSIA 100


>ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 49/91 (53%), Positives = 58/91 (63%)
 Frame = -2

Query: 274 TQMTLMSSSLPISKTPPISTLSKLTFNPKPLFSLPFHSKTKILSHSFKTRAKPRELILGN 95
           T  T     L   + P +S LS   F+ +  F   F    ++ S   K RAK ++L+LGN
Sbjct: 15  TPSTFQKRYLECQQLPFLSKLSN--FSVRRRF---FSDDWRLSSDVGKVRAKAKDLVLGN 69

Query: 94  PSVTVEKGKYSYDVETLINKLSSLPPRGSIA 2
           PSV VEKGKYSYDVETLINKLSSLPPRGSIA
Sbjct: 70  PSVIVEKGKYSYDVETLINKLSSLPPRGSIA 100