BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031411
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly...   252   2e-65
ref|XP_002520925.1| Photosystem II stability/assembly factor HCF...   248   5e-64
ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly...   243   1e-62
ref|XP_002310654.1| predicted protein [Populus trichocarpa] gi|2...   242   2e-62
gb|EEE66398.1| hypothetical protein OsJ_22738 [Oryza sativa Japo...   241   6e-62

>ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic [Vitis vinifera]
           gi|297737938|emb|CBI27139.3| unnamed protein product
           [Vitis vinifera]
          Length = 404

 Score =  252 bits (643), Expect = 2e-65
 Identities = 119/138 (86%), Positives = 124/138 (89%)
 Frame = +3

Query: 3   YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXX 182
           YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRAD    
Sbjct: 245 YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLW 304

Query: 183 XXXXXXXXXXSKGTGISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK 362
                     SKGTGISEDFEE+PVQSRGFGILDVGYRSK+EAWAAGGSG+LLRTTNGGK
Sbjct: 305 LLVRGGGLYLSKGTGISEDFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGK 364

Query: 363 TWSRDKAADDIAANLYSV 416
           TW+RDKAAD+IAANLYSV
Sbjct: 365 TWTRDKAADNIAANLYSV 382


>ref|XP_002520925.1| Photosystem II stability/assembly factor HCF136, chloroplast
           precursor, putative [Ricinus communis]
           gi|223539891|gb|EEF41470.1| Photosystem II
           stability/assembly factor HCF136, chloroplast precursor,
           putative [Ricinus communis]
          Length = 397

 Score =  248 bits (632), Expect = 5e-64
 Identities = 118/138 (85%), Positives = 122/138 (88%)
 Frame = +3

Query: 3   YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXX 182
           YYTGTFNTVNRSPDG+YVAVSSRGNFYLTWEPGQP+WQPHNRAVARRIQNMGWRAD    
Sbjct: 238 YYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLW 297

Query: 183 XXXXXXXXXXSKGTGISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK 362
                     SKGTGISEDFEE+ VQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK
Sbjct: 298 LLVRGGGLYLSKGTGISEDFEEISVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK 357

Query: 363 TWSRDKAADDIAANLYSV 416
           TW+RDKAAD IAANLYSV
Sbjct: 358 TWTRDKAADSIAANLYSV 375


>ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic-like [Cucumis sativus]
           gi|449488796|ref|XP_004158174.1| PREDICTED: photosystem
           II stability/assembly factor HCF136, chloroplastic-like
           [Cucumis sativus]
          Length = 406

 Score =  243 bits (620), Expect = 1e-62
 Identities = 113/138 (81%), Positives = 123/138 (89%)
 Frame = +3

Query: 3   YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXX 182
           YYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+WQPHNRA+ARRIQNMGWRAD    
Sbjct: 247 YYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLW 306

Query: 183 XXXXXXXXXXSKGTGISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK 362
                     SKGTGISE+FEEVPVQSRGFGILDVGYRSK+EAWAAGGSG+LL+TTNGG+
Sbjct: 307 LLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGR 366

Query: 363 TWSRDKAADDIAANLYSV 416
           +W+RDKAAD+IAANLYSV
Sbjct: 367 SWTRDKAADNIAANLYSV 384


>ref|XP_002310654.1| predicted protein [Populus trichocarpa] gi|222853557|gb|EEE91104.1|
           predicted protein [Populus trichocarpa]
          Length = 394

 Score =  242 bits (618), Expect = 2e-62
 Identities = 113/138 (81%), Positives = 123/138 (89%)
 Frame = +3

Query: 3   YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXX 182
           YYTGTFNTVNRSP+G+YVAVSSRGNFYLTWEPGQ +WQPHNRA+ARRIQNMGWRAD    
Sbjct: 235 YYTGTFNTVNRSPNGNYVAVSSRGNFYLTWEPGQAFWQPHNRAIARRIQNMGWRADGGLW 294

Query: 183 XXXXXXXXXXSKGTGISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK 362
                     SKGTGISE+FEE+PVQSRGFGILDVGYRSK+EAWAAGGSG+LLRTTNGGK
Sbjct: 295 LLVRGGGLYLSKGTGISEEFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGK 354

Query: 363 TWSRDKAADDIAANLYSV 416
           TW+RDKAAD+IAANLYSV
Sbjct: 355 TWTRDKAADNIAANLYSV 372


>gb|EEE66398.1| hypothetical protein OsJ_22738 [Oryza sativa Japonica Group]
          Length = 1553

 Score =  241 bits (614), Expect = 6e-62
 Identities = 114/138 (82%), Positives = 120/138 (86%)
 Frame = +3

Query: 3   YYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXX 182
           YYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQP+WQPHNRAVARRIQNMGWRAD    
Sbjct: 235 YYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLW 294

Query: 183 XXXXXXXXXXSKGTGISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGK 362
                     SKG+GI+EDFEE  VQSRGFGILDVGYRSKDEAWAAGGSG+LL+TTNGGK
Sbjct: 295 LLVRGGGLFLSKGSGITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGK 354

Query: 363 TWSRDKAADDIAANLYSV 416
           TW RDKAAD+IAANLYSV
Sbjct: 355 TWVRDKAADNIAANLYSV 372



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 34/38 (89%), Positives = 37/38 (97%)
 Frame = +3

Query: 303 DEAWAAGGSGILLRTTNGGKTWSRDKAADDIAANLYSV 416
           DEAWAAGGSG+LL+TTNGGKTW RDKAAD+IAANLYSV
Sbjct: 393 DEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSV 430