BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031218
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|2...   184   9e-45
emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]   173   2e-41
ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containi...   164   5e-39
ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34

>ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|222858026|gb|EEE95573.1|
           predicted protein [Populus trichocarpa]
          Length = 705

 Score =  184 bits (466), Expect = 9e-45
 Identities = 86/124 (69%), Positives = 105/124 (84%)
 Frame = +3

Query: 3   LALSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRD 182
           LAL+TALVDMYGKCGE+++AR +F SM  +DVM WTAMIS YAQA  +D AF LFVQMRD
Sbjct: 267 LALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRD 326

Query: 183 AGMKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVR 362
            G++PNE+TMV+LLSLCA  GALD+GKW HAYIDK+G+  D+IL TAL+DMYAKCGDI  
Sbjct: 327 NGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISG 386

Query: 363 ARQI 374
           A+++
Sbjct: 387 AQRL 390



 Score =  108 bits (269), Expect = 6e-22
 Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 22/141 (15%)
 Frame = +3

Query: 18  ALVDMYGKCGEVKAARTLFHSMCERDVMMW----------------------TAMISGYA 131
           AL+ MY +CG + +AR LF  M ERDV+ W                      TAMI+GY 
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208

Query: 132 QAKSLDQAFDLFVQMRDAGMKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLI 311
           +   L++   LFV+M +  + PN++TM++L+  C   GA+ LGK +HAYI + G    L 
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268

Query: 312 LSTALVDMYAKCGDIVRARQI 374
           L+TALVDMY KCG+I  AR I
Sbjct: 269 LATALVDMYGKCGEIRSARAI 289



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           L TAL+DMY KCG++  A+ LF    +RD+  W  M++GY      ++A  LF +M   G
Sbjct: 370 LKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLG 429

Query: 189 MKPNEVTMVNLLSLCAEAGALDLG-----KWIHAY-----IDKEGIIADLILSTALVD 332
           +KPN++T +  L  C+ AG +  G     K IH +     ++  G + DL+    L+D
Sbjct: 430 VKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLD 487


>emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  173 bits (438), Expect = 2e-41
 Identities = 83/124 (66%), Positives = 103/124 (83%)
 Frame = +3

Query: 3   LALSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRD 182
           LAL+TALVDMYGKC +++ AR LF S   RDVM+WTAM+S YAQA  +DQAF+LF QMR 
Sbjct: 333 LALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT 392

Query: 183 AGMKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVR 362
           +G++P +VT+V+LLSLCA AGALDLGKW+H+YIDKE +  D IL+TALVDMYAKCGDI  
Sbjct: 393 SGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 452

Query: 363 ARQI 374
           A ++
Sbjct: 453 AGRL 456



 Score =  121 bits (304), Expect = 5e-26
 Identities = 57/121 (47%), Positives = 83/121 (68%)
 Frame = +3

Query: 12  STALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAGM 191
           +TAL+DMY KCG +  AR LF+ + ++ V+ WTAMI+G  ++  L++   LF++M++  +
Sbjct: 235 TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENI 294

Query: 192 KPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVRARQ 371
            PNE+TM++L+  C   GAL LGK +HAYI + G    L L+TALVDMY KC DI  AR 
Sbjct: 295 FPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARA 354

Query: 372 I 374
           +
Sbjct: 355 L 355



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           +  AL+ MYG+C  V+ AR +F  M ERDV+ W+ MI   ++ K  D A +L  +M    
Sbjct: 131 VGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQ 190

Query: 189 MKPNEVTMVNLLSLCAEAGALDLGKWIHAYI--DKEGIIADLILSTALVDMYAKCGDIVR 362
           ++P+EV MV++++L A+   + +GK +HAY+  +       +  +TAL+DMYAKCG +  
Sbjct: 191 VRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGL 250

Query: 363 ARQI 374
           ARQ+
Sbjct: 251 ARQL 254



 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           L+TALVDMY KCG++ AA  LF     RD+ MW A+I+G+A     ++A D+F +M   G
Sbjct: 436 LNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQG 495

Query: 189 MKPNEVTMVNLLSLCAEAGALDLG-----KWIHAY-----IDKEGIIADLILSTALVD 332
           +KPN++T + LL  C+ AG +  G     K +H +     I+  G + DL+    L+D
Sbjct: 496 VKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 553


>ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  164 bits (416), Expect = 5e-39
 Identities = 73/124 (58%), Positives = 100/124 (80%)
 Frame = +3

Query: 3   LALSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRD 182
           L L+TA +DMYGKCG+V++AR++F S   +D+MMW+AMIS YAQ   +D+AFD+FV M  
Sbjct: 363 LVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTG 422

Query: 183 AGMKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVR 362
            G++PNE TMV+LL +CA+AG+L++GKWIH+YIDK+GI  D+IL T+ VDMYA CGDI  
Sbjct: 423 CGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDT 482

Query: 363 ARQI 374
           A ++
Sbjct: 483 AHRL 486



 Score =  120 bits (300), Expect = 2e-25
 Identities = 55/122 (45%), Positives = 80/122 (65%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           L TAL+DMY KC  +  AR +F  + +  ++ WTAMI+ Y    +L++   LFV+M   G
Sbjct: 264 LCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG 323

Query: 189 MKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVRAR 368
           M PNE+TM++L+  C  AGAL+LGK +HA+  + G    L+L+TA +DMY KCGD+  AR
Sbjct: 324 MFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 369 QI 374
            +
Sbjct: 384 SV 385



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
 Frame = +3

Query: 18  ALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAGMKP 197
           AL+ MY + G +  AR LF  +  +DV+ W+ MI  Y ++  LD+A DL   M    +KP
Sbjct: 164 ALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKP 223

Query: 198 NEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGII--ADLILSTALVDMYAKCGDIVRARQ 371
           +E+ M+++  + AE   L LGK +HAY+ + G    + + L TAL+DMY KC ++  AR+
Sbjct: 224 SEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARR 283

Query: 372 I 374
           +
Sbjct: 284 V 284



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
 Frame = +3

Query: 3   LALSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRD 182
           + L T+ VDMY  CG++  A  LF    +RD+ MW AMISG+A     + A +LF +M  
Sbjct: 464 MILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEA 523

Query: 183 AGMKPNEVTMVNLLSLCAEAGALDLGKWI-HAYIDKEGIIADLILSTALVDMYAKCGDIV 359
            G+ PN++T +  L  C+ +G L  GK + H  + + G    +     +VD+  + G + 
Sbjct: 524 LGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLD 583

Query: 360 RARQI 374
            A ++
Sbjct: 584 EAHEL 588


>ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  162 bits (409), Expect = 3e-38
 Identities = 75/124 (60%), Positives = 98/124 (79%)
 Frame = +3

Query: 3   LALSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRD 182
           LAL TAL+DMYGKCG+V  AR LF+ + ++DV +W+ +IS YA    +DQ F+LFV+M +
Sbjct: 327 LALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLN 386

Query: 183 AGMKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVR 362
             +KPN VTMV+LLSLCAEAGALDLGKW HAYI++ G+  D+IL TAL++MYAKCGD+  
Sbjct: 387 NDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTI 446

Query: 363 ARQI 374
           AR +
Sbjct: 447 ARSL 450



 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/124 (41%), Positives = 81/124 (65%)
 Frame = +3

Query: 3   LALSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRD 182
           ++++TAL+DMY K G + +A+ LF  + +R V+ WT MI+G  ++  LD+    F +M +
Sbjct: 226 VSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLE 285

Query: 183 AGMKPNEVTMVNLLSLCAEAGALDLGKWIHAYIDKEGIIADLILSTALVDMYAKCGDIVR 362
             + PNE+T+++L++ C   G LDLGKW HAY+ + G    L L TAL+DMY KCG +  
Sbjct: 286 EKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGY 345

Query: 363 ARQI 374
           AR +
Sbjct: 346 ARAL 349



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 31/82 (37%), Positives = 55/82 (67%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           L TAL++MY KCG+V  AR+LF+   +RD+ MW  M++G++      +A +LF +M   G
Sbjct: 430 LETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHG 489

Query: 189 MKPNEVTMVNLLSLCAEAGALD 254
           ++PN++T V++   C+ +G ++
Sbjct: 490 VEPNDITFVSIFHACSHSGLME 511



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 40/121 (33%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
 Frame = +3

Query: 18  ALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAGMKP 197
           AL++MY KCG + +AR +F  M ERDV+ WT M+  Y ++K+  +A  L  +M+  G+K 
Sbjct: 128 ALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKL 187

Query: 198 NEVTMVNLLSLCAEAGALDLGKWIHAYIDKE--GIIADLILSTALVDMYAKCGDIVRARQ 371
           + V +++L+++      +  G+ +H YI +       ++ ++TAL+DMY K G +  A++
Sbjct: 188 SGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQR 247

Query: 372 I 374
           +
Sbjct: 248 L 248



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = +3

Query: 105 WTAMISGYAQAKSLDQAFDLFVQMR--DAGMKPNEVTMVNLLSLCAEAGALDLGKWIHAY 278
           +  +IS Y        +F+ ++ MR  DA    N + + +LL  CA+A + DLG+ +H +
Sbjct: 55  YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFI-LPSLLKACAQASSGDLGRELHGF 113

Query: 279 IDKEGIIADLILSTALVDMYAKCGDIVRARQI 374
             K G  +D+ +  AL++MY KCG +V AR +
Sbjct: 114 AQKNGFASDVFVCNALMNMYEKCGCLVSARLV 145


>ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  150 bits (378), Expect = 1e-34
 Identities = 78/152 (51%), Positives = 100/152 (65%), Gaps = 31/152 (20%)
 Frame = +3

Query: 12  STALVDMYGKCGEVKAARTLFHSMCE-------------------------------RDV 98
           +TAL+DMY KCG +  AR LF+ + +                               RDV
Sbjct: 265 TTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDV 324

Query: 99  MMWTAMISGYAQAKSLDQAFDLFVQMRDAGMKPNEVTMVNLLSLCAEAGALDLGKWIHAY 278
           M+WTAM+S YAQA  +DQAF+LF QMR +G++P +VT+V+LLSLCA AGALDLGKW+H+Y
Sbjct: 325 MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSY 384

Query: 279 IDKEGIIADLILSTALVDMYAKCGDIVRARQI 374
           IDKE +  D IL+TALVDMYAKCGDI  A ++
Sbjct: 385 IDKERVEVDCILNTALVDMYAKCGDINAAGRL 416



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           +  AL+ MYG+C  V+ AR +F  M ERDV+ W+ MI   ++ K  D A +L  +M    
Sbjct: 161 VGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQ 220

Query: 189 MKPNEVTMVNLLSLCAEAGALDLGKWIHAYI--DKEGIIADLILSTALVDMYAKCGDIVR 362
           ++P+EV MV++++L A+   + +GK +HAY+  +       +  +TAL+DMYAKCG +  
Sbjct: 221 VRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGL 280

Query: 363 ARQI 374
           ARQ+
Sbjct: 281 ARQL 284



 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
 Frame = +3

Query: 9   LSTALVDMYGKCGEVKAARTLFHSMCERDVMMWTAMISGYAQAKSLDQAFDLFVQMRDAG 188
           L+TALVDMY KCG++ AA  LF     RD+ MW A+I+G+A     ++A D+F +M   G
Sbjct: 396 LNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQG 455

Query: 189 MKPNEVTMVNLLSLCAEAGALDLG-----KWIHAY-----IDKEGIIADLILSTALVD 332
           +KPN++T + LL  C+ AG +  G     K +H +     I+  G + DL+    L+D
Sbjct: 456 VKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 513