BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031217
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...    96   2e-18
ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_002879744.1| pentatricopeptide repeat-containing protein ...    87   1e-15
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...    84   9e-15

>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 8/106 (7%)
 Frame = -1

Query: 301 TPYKGKWQQTFNQQQAMEALKEAA------NNDEKP-LVSVLVNSFEMYACEPTPYAYSF 143
           +PYK +W + FNQQQAM++LK++A       +  KP L+S L++SF +Y  EP P A+ F
Sbjct: 23  SPYKARWHRIFNQQQAMQSLKQSALKPPQQESPNKPHLLSSLIHSFSIYDVEPAPKAFDF 82

Query: 142 VVKSLFKSSQLDQLPCVLDHMRN-ERFEPPERIFVEIIRIYGCENR 8
           + K+L K+SQ   +P VLDH+   E FEPPE  F  +I +YG  N+
Sbjct: 83  IFKTLVKTSQFHHIPSVLDHLEKVESFEPPESTFAYLIEVYGRTNK 128


>ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
           gi|449483740|ref|XP_004156675.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
          Length = 491

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
 Frame = -1

Query: 295 YKGKWQQTFNQQQAMEALKEAANNDEKPLV-SVLVNSFEMYACEPTPYAYSFVVKSLFKS 119
           +K KW QTF+Q +A+  LK+AAN D+  L+ S LV SF  Y+C PTP AY FV+K+L ++
Sbjct: 26  HKTKWHQTFDQDEALRILKQAANPDQPHLLLSALVTSFTAYSCHPTPNAYYFVLKTLART 85

Query: 118 SQLDQLPCVLDHMR-NERFEPPERIFVEIIRIYGCENRIR 2
           SQ   +P VL  ++  E F+ PE IFV++I++YG  NRI+
Sbjct: 86  SQFHHIPPVLHRLQFLENFQTPEYIFVDLIKLYGRMNRIQ 125


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Glycine max]
          Length = 499

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 13/113 (11%)
 Frame = -1

Query: 301 TPYKGKWQQTFNQQQAMEALKEA------ANNDEKP------LVSVLVNSFEMYACEPTP 158
           +PYK  W   F ++QAM+ LK+A      + + ++P      L+S L++SF+ Y+ +PTP
Sbjct: 23  SPYKTSWHHNFGEEQAMKNLKQATLEMDSSQHPQRPNLPCPFLLSTLLDSFKAYSIDPTP 82

Query: 157 YAYSFVVKSLFKSSQLDQLPCVLDHMRN-ERFEPPERIFVEIIRIYGCENRIR 2
            AY FV+K+L  +SQL  +P VL H+ + E+FE PE I V +IR YG  +R++
Sbjct: 83  KAYFFVLKTLTSTSQLQDIPPVLYHLEHLEKFETPESILVYLIRFYGLSDRVQ 135


>ref|XP_002879744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325583|gb|EFH56003.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 444

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
 Frame = -1

Query: 295 YKGKWQQTFNQQQAMEALKE--AANNDEKPLVSVLVNSFEMYACEPTPYAYSFVVKSLFK 122
           +K KW +   Q+ AME L+    A+++   ++  LV+SF+++ CEPTP AY FV+++L K
Sbjct: 16  FKTKWNENLKQKYAMEELRSNLLADSENGSVMRTLVSSFQLHNCEPTPQAYRFVIETLAK 75

Query: 121 SSQLDQLPCVLDHMR-NERFEPPERIFVEIIRIYGCENRI 5
           +SQL+ +  VLDH+  +E+F+ PE IF ++I  YG   RI
Sbjct: 76  TSQLENIASVLDHLEVSEKFDTPESIFRDVIAAYGFSGRI 115


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498545|gb|AES79748.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 653

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 7/107 (6%)
 Frame = -1

Query: 301 TPYKGKWQQTFNQQQAMEALKEAA----NNDEKPLVSVLVNSFEMYACEPTPYAYSFVVK 134
           +PYK  W   F +QQA++ L  A     NN++  L+S L++SF+ Y  +P+P AY F++K
Sbjct: 23  SPYKTSWHHNFGEQQAIQILINAKTQTQNNNDPFLLSTLIHSFKAYHTDPSPKAYFFLIK 82

Query: 133 SL--FKSSQLDQLPCVLDHM-RNERFEPPERIFVEIIRIYGCENRIR 2
           ++    +S L ++P +L+H+  NE+FE PE IF+ +IR YG  +R++
Sbjct: 83  TITNINTSHLHEIPHILNHLEHNEKFETPEFIFMYLIRFYGFNDRVQ 129