BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031078
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    59   3e-07

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
 Frame = +3

Query: 3   PLLFALAEDVLSKGIN------------YLKDYPSPSHLLFADNIFIFMNGNLRKVKNLT 146
           PLLF L E+VLS+ ++            Y +    P+H+L+AD++ IF  G  R ++ L 
Sbjct: 653 PLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIFCTGTKRNIRRLI 712

Query: 147 WLLEEYQNVVGQDINRNKSKLFLGGLT 227
            +  +Y  V GQ IN  KS+ F   +T
Sbjct: 713 KIFSQYSEVSGQLINNAKSRFFTSAMT 739