BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031065
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containi...   168   5e-40
ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containi...   165   3e-39
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2...   164   5e-39
emb|CBI16054.3| unnamed protein product [Vitis vinifera]              163   2e-38

>ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449474033|ref|XP_004154055.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449510921|ref|XP_004163811.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  168 bits (425), Expect = 5e-40
 Identities = 80/112 (71%), Positives = 94/112 (83%)
 Frame = -3

Query: 338 SWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVVLYDLDQVEKERI 159
           SWIEV+RKIYSF S+DE NPQ EQLHALLV LS+EMK++GY P+TK+VLYDLDQ EKERI
Sbjct: 518 SWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERI 577

Query: 158 LLGHSEKLAVAFGLLKVPKGMPIRVMKNLRVCGDCHSAIKLIAKITDREIIL 3
           +LGHSEKLAVAFGL+   KG  IR+ KNLR+C DCHS  K I+K  DREI++
Sbjct: 578 VLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMV 629


>ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  166 bits (419), Expect = 2e-39
 Identities = 76/112 (67%), Positives = 96/112 (85%)
 Frame = -3

Query: 338 SWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVVLYDLDQVEKERI 159
           SWIEVKRK+YSFVS+DE NPQ+E++HALLV+LS+EMK +GY+P+T VVLYDLD+ EKERI
Sbjct: 527 SWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERI 586

Query: 158 LLGHSEKLAVAFGLLKVPKGMPIRVMKNLRVCGDCHSAIKLIAKITDREIIL 3
           +LGHSEKLAVAFGL+   KG  IR+ KNLR+C DCH+  K I+K  +REI++
Sbjct: 587 VLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILV 638


>ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  165 bits (418), Expect = 3e-39
 Identities = 76/112 (67%), Positives = 96/112 (85%)
 Frame = -3

Query: 338 SWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVVLYDLDQVEKERI 159
           SWIEVKRK+YSFVS+DE NPQ+E++HALLV+LS+EMK +GY+P+T VVLYDLD+ EKERI
Sbjct: 527 SWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERI 586

Query: 158 LLGHSEKLAVAFGLLKVPKGMPIRVMKNLRVCGDCHSAIKLIAKITDREIIL 3
           +LGHSEKLAVAFGL+   KG  IR+ KNLR+C DCH+  K I+K  +REI++
Sbjct: 587 VLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILV 638


>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
           predicted protein [Populus trichocarpa]
          Length = 650

 Score =  164 bits (416), Expect = 5e-39
 Identities = 78/112 (69%), Positives = 96/112 (85%)
 Frame = -3

Query: 338 SWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVVLYDLDQVEKERI 159
           SWIEVKRKIYSFVS+DE+NP+MEQLHALLV+LS E+KE+GY+P+TKVVLYDL   EKERI
Sbjct: 519 SWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERI 578

Query: 158 LLGHSEKLAVAFGLLKVPKGMPIRVMKNLRVCGDCHSAIKLIAKITDREIIL 3
           +LGHSEKLAVAFGL+   KG  IR+ K+LR+C DCHS  K I+K  ++EI++
Sbjct: 579 VLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILV 630


>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  163 bits (412), Expect = 2e-38
 Identities = 77/112 (68%), Positives = 95/112 (84%)
 Frame = -3

Query: 338 SWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVVLYDLDQVEKERI 159
           S IE++RKIYSF+S+DE NPQ+EQLHALL++LS EMKEKGY+P+TKVVLYDLD  EKERI
Sbjct: 337 SCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERI 396

Query: 158 LLGHSEKLAVAFGLLKVPKGMPIRVMKNLRVCGDCHSAIKLIAKITDREIIL 3
           +LGHSEKLA+AFGL+   KG  IR+ KNLR+C DCHS  K I+K  +REI++
Sbjct: 397 VLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILV 448