BLASTX nr result

ID: Coptis24_contig00030953 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030953
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310882.1| AP2 domain-containing transcription factor [...    75   5e-12
ref|XP_002285467.2| PREDICTED: AP2-like ethylene-responsive tran...    56   3e-06
ref|XP_003527742.1| PREDICTED: AP2-like ethylene-responsive tran...    56   3e-06
ref|XP_002302387.1| AP2 domain-containing transcription factor [...    55   4e-06
ref|XP_004143528.1| PREDICTED: AP2-like ethylene-responsive tran...    55   8e-06

>ref|XP_002310882.1| AP2 domain-containing transcription factor [Populus trichocarpa]
           gi|222853785|gb|EEE91332.1| AP2 domain-containing
           transcription factor [Populus trichocarpa]
          Length = 543

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 43/91 (47%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = +1

Query: 148 MKSMGXXXXXXXXXXXWLGFSLSPQMNMEVPS--DXXXXXXXXXXXXXXXXXXXFFHSS- 318
           MKSM            WLGFSLSPQMNMEVPS  D                    FHS  
Sbjct: 1   MKSMNNDDGNNNHNADWLGFSLSPQMNMEVPSGTDHHQQTRSASAAVPTAIPTNLFHSQL 60

Query: 319 SHMNSGICYGVEGESAGFYSHLSAMPINSDG 411
            H+N G+ YGVEGE+ GFYS L  MP+ SDG
Sbjct: 61  PHLNCGLYYGVEGENGGFYSPLHVMPLKSDG 91


>ref|XP_002285467.2| PREDICTED: AP2-like ethylene-responsive transcription factor
           ANT-like [Vitis vinifera]
          Length = 674

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/73 (43%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 196 WLGFSLSPQMNMEVPSDXXXXXXXXXXXXXXXXXXXF-FHSSSHMNSGICYGVEGESAGF 372
           WLGFSLSP M MEV SD                     F  S H+NS   Y   GE+  F
Sbjct: 15  WLGFSLSPHMKMEVASDPQYHHQTQPAAAAVSSAVPTSFFLSPHLNSSAIYYGVGENGAF 74

Query: 373 YSHLSAMPINSDG 411
           +SHLS MP+ SDG
Sbjct: 75  HSHLSVMPLKSDG 87


>ref|XP_003527742.1| PREDICTED: AP2-like ethylene-responsive transcription factor
           ANT-like [Glycine max]
          Length = 635

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +1

Query: 196 WLGFSLSPQMNMEVPSDXXXXXXXXXXXXXXXXXXXFFHSSSHM-NSGICYGVEGESAGF 372
           WLGFSLSP M MEV S                    F+ S SHM NSG+CY V GE+  F
Sbjct: 18  WLGFSLSPHMKMEVTS--------AATVSDNNVPTTFYMSPSHMSNSGMCYSV-GENGNF 68

Query: 373 YSHLSAMPINSDG 411
           +S L+ MP+ SDG
Sbjct: 69  HSPLTVMPLKSDG 81


>ref|XP_002302387.1| AP2 domain-containing transcription factor [Populus trichocarpa]
           gi|222844113|gb|EEE81660.1| AP2 domain-containing
           transcription factor [Populus trichocarpa]
          Length = 637

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 36/80 (45%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
 Frame = +1

Query: 196 WLGFSLSPQMNMEVPSD-------XXXXXXXXXXXXXXXXXXXFFHSSSHMNS-GICYGV 351
           WLGFSLSP M MEV SD                          F+ S++H NS GI YGV
Sbjct: 15  WLGFSLSPHMKMEVASDPQHHHQYHHQNHAPTAVSVSAAVPTSFYLSTTHYNSPGISYGV 74

Query: 352 EGESAGFYSHLSAMPINSDG 411
            GE+ GF+S LS MP+ SDG
Sbjct: 75  -GENDGFHSPLSVMPLKSDG 93


>ref|XP_004143528.1| PREDICTED: AP2-like ethylene-responsive transcription factor
           ANT-like [Cucumis sativus]
           gi|449532844|ref|XP_004173388.1| PREDICTED: AP2-like
           ethylene-responsive transcription factor ANT-like
           [Cucumis sativus]
          Length = 608

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/35 (68%), Positives = 26/35 (74%)
 Frame = +1

Query: 307 FHSSSHMNSGICYGVEGESAGFYSHLSAMPINSDG 411
           FHS S  N GICYGV+GE   FYS LSAMP+ SDG
Sbjct: 20  FHSPSQFNYGICYGVDGEHGAFYSPLSAMPLKSDG 54


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