BLASTX nr result

ID: Coptis24_contig00030895 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030895
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30038.3| unnamed protein product [Vitis vinifera]               81   5e-17
emb|CAN63788.1| hypothetical protein VITISV_000288 [Vitis vinifera]    81   5e-17
ref|XP_002532341.1| Receptor protein kinase CLAVATA1 precursor, ...    84   1e-16
ref|XP_002275203.2| PREDICTED: LOW QUALITY PROTEIN: protein STRU...    81   3e-16
ref|XP_004159012.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMIL...    74   4e-16

>emb|CBI30038.3| unnamed protein product [Vitis vinifera]
          Length = 737

 Score = 80.9 bits (198), Expect(2) = 5e-17
 Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
 Frame = +3

Query: 27  YTAQENSQPGVDQLKRDLYAFRVL--ELLTGRQPIDSSRPRQEQSMVKWASTRLHDYKCL 200
           Y A E+ QPG+D  K D+YAF VL  ELLTGR+P DSSR R+EQS+VKWAS RLHD   L
Sbjct: 589 YIAPEHGQPGIDNKKSDVYAFGVLLLELLTGRRPFDSSRSREEQSLVKWASARLHDNDSL 648

Query: 201 EAIVD 215
             +VD
Sbjct: 649 GQMVD 653



 Score = 31.6 bits (70), Expect(2) = 5e-17
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 236 LLQLCIQTEPEFRLTISEIVDS----LELLNNRS*EDG-FGRESFDLSLQTINT 382
           ++ LCIQ E EFR  ++E+V+S    L+   +R  E G    E FD S  + NT
Sbjct: 671 IVSLCIQPEKEFRPPMTEVVESVRRLLQKTRSRLIEGGEVEVEGFDKSFHSTNT 724


>emb|CAN63788.1| hypothetical protein VITISV_000288 [Vitis vinifera]
          Length = 658

 Score = 80.9 bits (198), Expect(2) = 5e-17
 Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
 Frame = +3

Query: 27  YTAQENSQPGVDQLKRDLYAFRVL--ELLTGRQPIDSSRPRQEQSMVKWASTRLHDYKCL 200
           Y A E+ QPG+D  K D+YAF VL  ELLTGR+P DSSR R+EQS+VKWAS RLHD   L
Sbjct: 510 YIAPEHGQPGIDNKKSDVYAFGVLLLELLTGRRPFDSSRSREEQSLVKWASARLHDNDSL 569

Query: 201 EAIVD 215
             +VD
Sbjct: 570 GQMVD 574



 Score = 31.6 bits (70), Expect(2) = 5e-17
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 236 LLQLCIQTEPEFRLTISEIVDS----LELLNNRS*EDG-FGRESFDLSLQTINT 382
           ++ LCIQ E EFR  ++E+V+S    L+   +R  E G    E FD S  + NT
Sbjct: 592 IVSLCIQPEKEFRPPMTEVVESVRRLLQKTRSRLIEGGEVEVEGFDKSFHSTNT 645


>ref|XP_002532341.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus
           communis] gi|223527958|gb|EEF30043.1| Receptor protein
           kinase CLAVATA1 precursor, putative [Ricinus communis]
          Length = 718

 Score = 84.0 bits (206), Expect(2) = 1e-16
 Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
 Frame = +3

Query: 12  VSCTDYTAQENSQPGVDQLKRDLYAFRVL--ELLTGRQPIDSSRPRQEQSMVKWASTRLH 185
           V  T YTA E+ +PG D  K D+YAF VL  ELLTGR+P DSS+ R+EQS+ KWAS+RLH
Sbjct: 564 VGDTGYTAPEHGEPGTDNTKSDVYAFGVLLLELLTGRKPFDSSKSRKEQSLAKWASSRLH 623

Query: 186 DYKCLEAIVDPTTR 227
           D   L  +VDP+ +
Sbjct: 624 DNAYLAQMVDPSIK 637



 Score = 26.9 bits (58), Expect(2) = 1e-16
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 236 LLQLCIQTEPEFRLTISEIVDSL-ELLNN 319
           ++  CIQ E  FR  +SEIV+SL  LL N
Sbjct: 651 IVSFCIQPEKLFRPPMSEIVESLASLLQN 679


>ref|XP_002275203.2| PREDICTED: LOW QUALITY PROTEIN: protein STRUBBELIG-RECEPTOR FAMILY
           2 [Vitis vinifera]
          Length = 721

 Score = 80.9 bits (198), Expect(2) = 3e-16
 Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
 Frame = +3

Query: 27  YTAQENSQPGVDQLKRDLYAFRVL--ELLTGRQPIDSSRPRQEQSMVKWASTRLHDYKCL 200
           Y A E+ QPG+D  K D+YAF VL  ELLTGR+P DSSR R+EQS+VKWAS RLHD   L
Sbjct: 565 YIAPEHGQPGIDNKKSDVYAFGVLLLELLTGRRPFDSSRSREEQSLVKWASARLHDNDSL 624

Query: 201 EAIVD 215
             +VD
Sbjct: 625 GQMVD 629



 Score = 28.9 bits (63), Expect(2) = 3e-16
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 LLQLCIQTEPEFRLTISEIVDSLELL 313
           ++ LCIQ E EFR  ++E+V+S+  L
Sbjct: 647 IVSLCIQPEKEFRPPMTEVVESVRRL 672


>ref|XP_004159012.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 7-like [Cucumis
           sativus]
          Length = 715

 Score = 74.3 bits (181), Expect(2) = 4e-16
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
 Frame = +3

Query: 27  YTAQENSQPGVDQLKRDLYAFRV--LELLTGRQPIDSSRPRQEQSMVKWASTRLHDYKCL 200
           YTA E +  G   LK D+Y+F V  LELLTGR+P DSSRPR EQS+V+WA+ +LHD   L
Sbjct: 579 YTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDAL 638

Query: 201 EAIVDP 218
             +VDP
Sbjct: 639 TKMVDP 644



 Score = 35.0 bits (79), Expect(2) = 4e-16
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +2

Query: 236 LLQLCIQTEPEFRLTISEIVDSLELLNNRS 325
           ++ LC+QTEPEFR  +SE+V++L  L  R+
Sbjct: 661 VIALCVQTEPEFRPPMSEVVEALVRLVQRA 690


Top