BLASTX nr result

ID: Coptis24_contig00030878 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030878
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300856.1| predicted protein [Populus trichocarpa] gi|2...   140   1e-31
ref|XP_002307572.1| predicted protein [Populus trichocarpa] gi|2...   139   3e-31
ref|XP_002307571.1| predicted protein [Populus trichocarpa] gi|2...   139   3e-31
ref|XP_002516716.1| multidrug resistance pump, putative [Ricinus...   138   5e-31
ref|XP_002282932.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vit...   136   2e-30

>ref|XP_002300856.1| predicted protein [Populus trichocarpa] gi|222842582|gb|EEE80129.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score =  140 bits (352), Expect = 1e-31
 Identities = 69/93 (74%), Positives = 76/93 (81%)
 Frame = +3

Query: 3   SIIVSIFNFMLSLITQMFTGHLGTLELAGVSIANVGIQGLAYGIMLGMASAVQTVCGQAY 182
           SIIVS+  FMLS +TQMF+GHLG LELAG SIANVGIQGLAYGIMLGMASAVQTVCGQAY
Sbjct: 58  SIIVSVATFMLSFVTQMFSGHLGALELAGASIANVGIQGLAYGIMLGMASAVQTVCGQAY 117

Query: 183 GAKKYASLGIICQKXXXXXXXXXXXXSFLYWYS 281
           GAKKY+S+GIICQK            +FLYW+S
Sbjct: 118 GAKKYSSMGIICQKAIILHLGAAFLLTFLYWFS 150


>ref|XP_002307572.1| predicted protein [Populus trichocarpa] gi|222857021|gb|EEE94568.1|
           predicted protein [Populus trichocarpa]
          Length = 505

 Score =  139 bits (349), Expect = 3e-31
 Identities = 68/93 (73%), Positives = 76/93 (81%)
 Frame = +3

Query: 3   SIIVSIFNFMLSLITQMFTGHLGTLELAGVSIANVGIQGLAYGIMLGMASAVQTVCGQAY 182
           SIIVS+  FMLS +TQMF+GHLG LELAG SIANVGIQGLAYGIMLGMASAVQTVCGQAY
Sbjct: 60  SIIVSVSTFMLSFVTQMFSGHLGALELAGASIANVGIQGLAYGIMLGMASAVQTVCGQAY 119

Query: 183 GAKKYASLGIICQKXXXXXXXXXXXXSFLYWYS 281
           GAKKY+S+GIICQ+            +FLYW+S
Sbjct: 120 GAKKYSSMGIICQRAIILHLGAAFLLTFLYWFS 152


>ref|XP_002307571.1| predicted protein [Populus trichocarpa] gi|222857020|gb|EEE94567.1|
           predicted protein [Populus trichocarpa]
          Length = 505

 Score =  139 bits (349), Expect = 3e-31
 Identities = 68/93 (73%), Positives = 76/93 (81%)
 Frame = +3

Query: 3   SIIVSIFNFMLSLITQMFTGHLGTLELAGVSIANVGIQGLAYGIMLGMASAVQTVCGQAY 182
           SIIVS+  FMLS +TQMF+GHLG LELAG SIANVGIQGLAYGIMLGMASAVQTVCGQAY
Sbjct: 60  SIIVSVSTFMLSFVTQMFSGHLGALELAGASIANVGIQGLAYGIMLGMASAVQTVCGQAY 119

Query: 183 GAKKYASLGIICQKXXXXXXXXXXXXSFLYWYS 281
           GAKKY+S+GIICQ+            +FLYW+S
Sbjct: 120 GAKKYSSMGIICQRAIILHLGAAFLLTFLYWFS 152


>ref|XP_002516716.1| multidrug resistance pump, putative [Ricinus communis]
           gi|223544211|gb|EEF45735.1| multidrug resistance pump,
           putative [Ricinus communis]
          Length = 313

 Score =  138 bits (347), Expect = 5e-31
 Identities = 64/93 (68%), Positives = 77/93 (82%)
 Frame = +3

Query: 3   SIIVSIFNFMLSLITQMFTGHLGTLELAGVSIANVGIQGLAYGIMLGMASAVQTVCGQAY 182
           SI+ SIFNFMLS +TQMF GHLG++ELAG S+ANVGIQGLAYGIMLGMASAVQTVCGQAY
Sbjct: 59  SIVASIFNFMLSFVTQMFVGHLGSVELAGASVANVGIQGLAYGIMLGMASAVQTVCGQAY 118

Query: 183 GAKKYASLGIICQKXXXXXXXXXXXXSFLYWYS 281
           GAK+Y+++G+ICQ+            +FLYW+S
Sbjct: 119 GAKQYSAMGVICQRAIVLHLGAAIPLTFLYWFS 151


>ref|XP_002282932.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera]
           gi|302143501|emb|CBI22062.3| unnamed protein product
           [Vitis vinifera]
          Length = 504

 Score =  136 bits (343), Expect = 2e-30
 Identities = 66/93 (70%), Positives = 75/93 (80%)
 Frame = +3

Query: 3   SIIVSIFNFMLSLITQMFTGHLGTLELAGVSIANVGIQGLAYGIMLGMASAVQTVCGQAY 182
           SI+ SIFN+MLS +T MFTGHLG LELAG SIA+VGIQGLAYGIMLGMASAVQTVCGQAY
Sbjct: 59  SIVASIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAY 118

Query: 183 GAKKYASLGIICQKXXXXXXXXXXXXSFLYWYS 281
           GAKKY ++GIICQ+            +FLYW+S
Sbjct: 119 GAKKYKAMGIICQRAIILHLGAAVLLTFLYWFS 151


Top