BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030804
         (525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16128.3| unnamed protein product [Vitis vinifera]              238   4e-61
emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]   238   4e-61
ref|NP_192906.1| pentatricopeptide repeat-containing protein [Ar...   232   3e-59
ref|XP_002872610.1| pentatricopeptide repeat-containing protein ...   229   1e-58
ref|XP_002887091.1| pentatricopeptide repeat-containing protein ...   229   2e-58

>emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  238 bits (607), Expect = 4e-61
 Identities = 110/177 (62%), Positives = 141/177 (79%), Gaps = 3/177 (1%)
 Frame = -3

Query: 523 WLLFNETTNK---DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGC 353
           W +FNET      D +SFGIMIKGCC+VG++ KGFE+L QM EMG SP VV+YT+LIDGC
Sbjct: 150 WRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 209

Query: 352 CKKGDIEEANKLFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNM 173
           CK GDIE   +LF +MG L +V N+ TYTV+ING+FK G KK+G+ELYE+MK+ G+ PN+
Sbjct: 210 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 269

Query: 172 YTYNSVLNQYCKDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
           YTYNS++ + C DG ++ AF +F EMRE+GVA NVVTYNTLI GLC+ER+ L+AE+L
Sbjct: 270 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL 326



 Score =  103 bits (257), Expect = 2e-20
 Identities = 49/161 (30%), Positives = 90/161 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++  +I G CQ   V++   ++ +M   G SP ++ Y +LIDG C  G++++A+ LF +M
Sbjct: 306 TYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQM 365

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
            S G  P+  TY ++I G+ +        ++  EM+ RG++P+  TY  +++   +  N+
Sbjct: 366 KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNI 425

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            KAF+++  M + G+  ++  Y  LI GLC      +A KL
Sbjct: 426 EKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKL 466



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 52/161 (32%), Positives = 90/161 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I+I G  +  +     +++ +M   G SP+ V YT L+D   +  +IE+A +++  M
Sbjct: 376 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 435

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
              GLV +   Y V+I+G    G  KE  +L++ +    + PN   YN+++  YCK+G+ 
Sbjct: 436 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSS 495

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            +A R+  EM E G+  NV +YN+ I  LC++ K  +AE L
Sbjct: 496 YRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVL 536



 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 49/152 (32%), Positives = 81/152 (53%)
 Frame = -3

Query: 487 HSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIE 308
           +++  MI  CC  G +   FE+  +M E G +  VV Y +LI G C++  + EA +L   
Sbjct: 270 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCR 329

Query: 307 MGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGN 128
           M   GL PN ++Y  +I+GY   G   +   L+ +MK  G +P++ TYN ++  + +  N
Sbjct: 330 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKN 389

Query: 127 VSKAFRMFGEMREKGVARNVVTYNTLISGLCR 32
            +    M  EM  +G++ + VTY  L+  L R
Sbjct: 390 SAGVTDMVREMEARGLSPSKVTYTILMDALVR 421



 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 48/145 (33%), Positives = 80/145 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I++    +  ++ K F+I + M + G    + IY  LI G C  GD++EA+KLF  +
Sbjct: 411 TYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 470

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
             + L PN+V Y  MI GY K+G     L L +EM   G+ PN+ +YNS +   CKD   
Sbjct: 471 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKW 530

Query: 124 SKAFRMFGEMREKGVARNVVTYNTL 50
           ++A  +  +M E G+  ++  +N +
Sbjct: 531 TEAEVLLKDMIELGLKPSISIWNMI 555



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/113 (31%), Positives = 58/113 (51%)
 Frame = -3

Query: 493 DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLF 314
           D + +G++I G C VG + +  ++   + EM   P  VIY ++I G CK+G    A +L 
Sbjct: 443 DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 502

Query: 313 IEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSV 155
            EMG  G+VPN  +Y   I    K     E   L ++M   G+ P++  +N +
Sbjct: 503 KEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555


>emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  238 bits (607), Expect = 4e-61
 Identities = 110/177 (62%), Positives = 141/177 (79%), Gaps = 3/177 (1%)
 Frame = -3

Query: 523 WLLFNETTNK---DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGC 353
           W +FNET      D +SFGIMIKGCC+VG++ KGFE+L QM EMG SP VV+YT+LIDGC
Sbjct: 137 WRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 196

Query: 352 CKKGDIEEANKLFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNM 173
           CK GDIE   +LF +MG L +V N+ TYTV+ING+FK G KK+G+ELYE+MK+ G+ PN+
Sbjct: 197 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 256

Query: 172 YTYNSVLNQYCKDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
           YTYNS++ + C DG ++ AF +F EMRE+GVA NVVTYNTLI GLC+ER+ L+AE+L
Sbjct: 257 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL 313



 Score =  103 bits (257), Expect = 2e-20
 Identities = 49/161 (30%), Positives = 90/161 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++  +I G CQ   V++   ++ +M   G SP ++ Y +LIDG C  G++++A+ LF +M
Sbjct: 293 TYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQM 352

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
            S G  P+  TY ++I G+ +        ++  EM+ RG++P+  TY  +++   +  N+
Sbjct: 353 KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNI 412

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            KAF+++  M + G+  ++  Y  LI GLC      +A KL
Sbjct: 413 EKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKL 453



 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/161 (32%), Positives = 90/161 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I+I G  +  +     +++ +M   G SP+ V YT L+D   +  +IE+A +++  M
Sbjct: 363 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 422

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
              GLV +   Y V+I+G    G  KE  +L++ +    + PN   YN+++  YCK+G+ 
Sbjct: 423 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSS 482

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            +A R+  EM E G+  NV +YN+ I  LC++ K  +AE L
Sbjct: 483 YRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVL 523



 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 49/152 (32%), Positives = 81/152 (53%)
 Frame = -3

Query: 487 HSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIE 308
           +++  MI  CC  G +   FE+  +M E G +  VV Y +LI G C++  + EA +L   
Sbjct: 257 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCR 316

Query: 307 MGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGN 128
           M   GL PN ++Y  +I+GY   G   +   L+ +MK  G +P++ TYN ++  + +  N
Sbjct: 317 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKN 376

Query: 127 VSKAFRMFGEMREKGVARNVVTYNTLISGLCR 32
            +    M  EM  +G++ + VTY  L+  L R
Sbjct: 377 SAGVTDMVREMEARGLSPSKVTYTILMDALVR 408



 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 48/145 (33%), Positives = 80/145 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I++    +  ++ K F+I + M + G    + IY  LI G C  GD++EA+KLF  +
Sbjct: 398 TYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 457

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
             + L PN+V Y  MI GY K+G     L L +EM   G+ PN+ +YNS +   CKD   
Sbjct: 458 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKW 517

Query: 124 SKAFRMFGEMREKGVARNVVTYNTL 50
           ++A  +  +M E G+  ++  +N +
Sbjct: 518 TEAEVLLKDMIELGLKPSISIWNMI 542



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 36/113 (31%), Positives = 58/113 (51%)
 Frame = -3

Query: 493 DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLF 314
           D + +G++I G C VG + +  ++   + EM   P  VIY ++I G CK+G    A +L 
Sbjct: 430 DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 489

Query: 313 IEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSV 155
            EMG  G+VPN  +Y   I    K     E   L ++M   G+ P++  +N +
Sbjct: 490 KEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542


>ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g11690 gi|4539460|emb|CAB39940.1| putative protein
           [Arabidopsis thaliana] gi|7267869|emb|CAB78212.1|
           putative protein [Arabidopsis thaliana]
           gi|91806660|gb|ABE66057.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332657639|gb|AEE83039.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  232 bits (591), Expect = 3e-59
 Identities = 109/177 (61%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
 Frame = -3

Query: 523 WLLFNETTNK---DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGC 353
           W  FNE  +K   D +SFGI+IKGCC+ G + K F++L ++ E GFSP VVIYT+LIDGC
Sbjct: 149 WSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGC 208

Query: 352 CKKGDIEEANKLFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNM 173
           CKKG+IE+A  LF EMG LGLV NE TYTV+ING FK G KK+G E+YE+M+  GV PN+
Sbjct: 209 CKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268

Query: 172 YTYNSVLNQYCKDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
           YTYN V+NQ CKDG    AF++F EMRE+GV+ N+VTYNTLI GLCRE K  +A K+
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKV 325



 Score =  117 bits (294), Expect = 8e-25
 Identities = 59/161 (36%), Positives = 97/161 (60%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I++ G C+ G      +++ +M E G  P+ V YT LID   +  ++E+A +L + M
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSM 434

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
             LGLVP+  TY+V+I+G+  KG   E   L++ M  +   PN   YN+++  YCK+G+ 
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSS 494

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            +A ++  EM EK +A NV +Y  +I  LC+ERK  +AE+L
Sbjct: 495 YRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERL 535



 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/166 (33%), Positives = 96/166 (57%)
 Frame = -3

Query: 499 NKDSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANK 320
           N +  ++  +I G C VG + K   +   +   G SP++V Y  L+ G C+KGD   A K
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAK 394

Query: 319 LFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYC 140
           +  EM   G+ P++VTYT++I+ + +    ++ ++L   M+  G+ P+++TY+ +++ +C
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454

Query: 139 KDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
             G +++A R+F  M EK    N V YNT+I G C+E    +A KL
Sbjct: 455 IKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKL 500



 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/152 (33%), Positives = 89/152 (58%)
 Frame = -3

Query: 487 HSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIE 308
           +++  ++   C+ G     F++  +M E G S  +V Y +LI G C++  + EANK+  +
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328

Query: 307 MGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGN 128
           M S G+ PN +TY  +I+G+   G   + L L  ++K RG++P++ TYN +++ +C+ G+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD 388

Query: 127 VSKAFRMFGEMREKGVARNVVTYNTLISGLCR 32
            S A +M  EM E+G+  + VTY  LI    R
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420



 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 48/161 (29%), Positives = 93/161 (57%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++  +I G C+   + +  +++ QM   G +P ++ Y +LIDG C  G + +A  L  ++
Sbjct: 305 TYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
            S GL P+ VTY ++++G+ +KG      ++ +EM+ RG+ P+  TY  +++ + +  N+
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            KA ++   M E G+  +V TY+ LI G C + +  +A +L
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 44/135 (32%), Positives = 73/135 (54%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I+I    +  ++ K  ++   M E+G  P V  Y+ LI G C KG + EA++LF  M
Sbjct: 410 TYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
                 PNEV Y  MI GY K+G     L+L +EM+ + + PN+ +Y  ++   CK+   
Sbjct: 470 VEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKS 529

Query: 124 SKAFRMFGEMREKGV 80
            +A R+  +M + G+
Sbjct: 530 KEAERLVEKMIDSGI 544



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 40/124 (32%), Positives = 63/124 (50%)
 Frame = -3

Query: 493 DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLF 314
           D H++ ++I G C  G + +   +   M+E    P  VIY ++I G CK+G    A KL 
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLL 501

Query: 313 IEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKD 134
            EM    L PN  +Y  MI    K+   KE   L E+M   G++P+  +  S++++   D
Sbjct: 502 KEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST-SILSLISRAKND 560

Query: 133 GNVS 122
            +VS
Sbjct: 561 SHVS 564


>ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297318447|gb|EFH48869.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 575

 Score =  229 bits (585), Expect = 1e-58
 Identities = 107/177 (60%), Positives = 134/177 (75%), Gaps = 3/177 (1%)
 Frame = -3

Query: 523 WLLFNETTNK---DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGC 353
           W  FNE+  K   D +SFGI+IKGCC+ G + K F++L ++ E GFSP VVIYT+LIDGC
Sbjct: 149 WCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC 208

Query: 352 CKKGDIEEANKLFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNM 173
           CKKG+IE+A  LF EMG  GLV NE TYTV+I+G FK G KK+G E+YE+M+  GV PN+
Sbjct: 209 CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNL 268

Query: 172 YTYNSVLNQYCKDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
           YTYN V+NQ CKDG    AF++F EMRE+GV+ N+VTYNTLI GLCRE K  +A K+
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325



 Score =  115 bits (289), Expect = 3e-24
 Identities = 60/161 (37%), Positives = 97/161 (60%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ +++ G C+ G      +++ +M E G  P+ V YT LID   +  ++E A +L   M
Sbjct: 375 TYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSM 434

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
             LGLVP+  TY+V+I+G+  KG   E   L++ M  + + PN   YN+++  YCK+G+ 
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSS 494

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            +A R+F +M EK +A NV +Y+ LI  LC+ERK  +AE L
Sbjct: 495 YRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDL 535



 Score =  110 bits (275), Expect = 1e-22
 Identities = 54/166 (32%), Positives = 96/166 (57%)
 Frame = -3

Query: 499 NKDSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANK 320
           N +  ++  +I G C VG + K   +   +   G SP++V Y  L+ G C+KGD   A K
Sbjct: 335 NPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAK 394

Query: 319 LFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYC 140
           +  EM   G+ P++VTYT++I+ + +    +  ++L   M+  G+ P+++TY+ +++ +C
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFC 454

Query: 139 KDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
             G +++A R+F  M EK +  N V YNT+I G C+E    +A +L
Sbjct: 455 IKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRL 500



 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/152 (32%), Positives = 87/152 (57%)
 Frame = -3

Query: 487 HSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIE 308
           +++  ++   C+ G     F++  +M E G S  +V Y +LI G C++    EANK+  +
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 307 MGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGN 128
           M S  + PN +TY  +I+G+   G   + L L  ++K RG++P++ TYN +++ +C+ G+
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGD 388

Query: 127 VSKAFRMFGEMREKGVARNVVTYNTLISGLCR 32
            S A +M  EM E+G+  + VTY  LI    R
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420



 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 47/161 (29%), Positives = 90/161 (55%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++  +I G C+     +  +++ QM     +P ++ Y +LIDG C  G + +A  L  ++
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDL 364

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
            S GL P+ VTY V+++G+ +KG      ++ +EM+ RG+ P+  TY  +++ + +  N+
Sbjct: 365 KSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
             A ++   M E G+  +V TY+ LI G C + +  +A +L
Sbjct: 425 ETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 42/135 (31%), Positives = 74/135 (54%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I+I    +  ++    ++ + M E+G  P V  Y+ LI G C KG + EA++LF  M
Sbjct: 410 TYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
               L PNEV Y  MI GY K+G     L L+ +M+ + + PN+ +Y+ ++   CK+  +
Sbjct: 470 VEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKL 529

Query: 124 SKAFRMFGEMREKGV 80
            +A  +  +M + G+
Sbjct: 530 KEAEDLVEKMIDSGI 544



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/106 (32%), Positives = 56/106 (52%)
 Frame = -3

Query: 493 DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLF 314
           D H++ ++I G C  G + +   +   M+E    P  VIY ++I G CK+G    A +LF
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLF 501

Query: 313 IEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPN 176
            +M    L PN  +Y+ +I    K+   KE  +L E+M   G++P+
Sbjct: 502 RDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPS 547


>ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297332932|gb|EFH63350.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 568

 Score =  229 bits (583), Expect = 2e-58
 Identities = 106/177 (59%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
 Frame = -3

Query: 523 WLLFNETTNK---DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGC 353
           W  FNE+  K   D +SFGI+IKGCC+ G + K F++L ++ E GFSP VVIYT+LIDGC
Sbjct: 149 WRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC 208

Query: 352 CKKGDIEEANKLFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNM 173
           CK+G+IE+A  LF EMG  GLV NE TYTV+I+G FK G KK+G E+YE+M+  GV PN+
Sbjct: 209 CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNL 268

Query: 172 YTYNSVLNQYCKDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
           YTYN V+NQ+CKDG    AF++F EMRE+GV+ N+VTYNTLI GLCRE K  +A K+
Sbjct: 269 YTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325



 Score =  113 bits (283), Expect = 1e-23
 Identities = 58/161 (36%), Positives = 95/161 (59%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I++ G C+ G      +++ +M E G  P+ + YT LID   +  ++E+A +L   M
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM 434

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
             LGL P+  TY+V+I+G+  KG   E   L++ M  + + PN   YN+++  YCK+G+ 
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSS 494

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            +A R+F EM EK +  NV +Y  +I  LC+ERK  +AE L
Sbjct: 495 YRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGL 535



 Score =  108 bits (270), Expect = 5e-22
 Identities = 52/166 (31%), Positives = 96/166 (57%)
 Frame = -3

Query: 499 NKDSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANK 320
           N +  ++  +I G C VG + K   +   +   G SP++V Y  L+ G CKKGD   A K
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGK 394

Query: 319 LFIEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYC 140
           +  EM   G+ P+++TYT++I+ + +    ++ ++L   M+  G+ P+++TY+ +++ +C
Sbjct: 395 VVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFC 454

Query: 139 KDGNVSKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
             G +++A R+F  M  K +  N V YNT++ G C+E    +A +L
Sbjct: 455 IKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRL 500



 Score =  102 bits (254), Expect = 3e-20
 Identities = 50/152 (32%), Positives = 88/152 (57%)
 Frame = -3

Query: 487 HSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIE 308
           +++  ++   C+ G     F++  +M E G S  +V Y +LI G C++    EANK+  +
Sbjct: 269 YTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 307 MGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGN 128
           M S G+ PN +TY  +I+G+   G   + L L  ++K RG++P++ TYN +++ +CK G+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 127 VSKAFRMFGEMREKGVARNVVTYNTLISGLCR 32
            S A ++  EM E+G+  + +TY  LI    R
Sbjct: 389 TSGAGKVVKEMEERGIKPSKITYTILIDTFAR 420



 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 49/161 (30%), Positives = 92/161 (57%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++  +I G C+     +  +++ QM   G +P ++ Y +LIDG C  G + +A  L  ++
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
            S GL P+ VTY ++++G+ KKG      ++ +EM+ RG+ P+  TY  +++ + +  N+
Sbjct: 365 KSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNM 424

Query: 124 SKAFRMFGEMREKGVARNVVTYNTLISGLCRERKPLQAEKL 2
            KA ++   M E G+  +V TY+ LI G C + +  +A +L
Sbjct: 425 EKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 42/135 (31%), Positives = 76/135 (56%)
 Frame = -3

Query: 484 SFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLFIEM 305
           ++ I+I    ++ ++ K  ++ + M E+G +P V  Y+ LI G C KG + EA++LF  M
Sbjct: 410 TYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLM 469

Query: 304 GSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKDGNV 125
            +  L PN+V Y  M+ GY K+G     L L+ EM+ + + PN+ +Y  ++   CK+   
Sbjct: 470 VAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKS 529

Query: 124 SKAFRMFGEMREKGV 80
            +A  +  +M + G+
Sbjct: 530 KEAEGLVEKMIDTGI 544



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 39/124 (31%), Positives = 61/124 (49%)
 Frame = -3

Query: 493 DSHSFGIMIKGCCQVGHVIKGFEILAQMLEMGFSPTVVIYTSLIDGCCKKGDIEEANKLF 314
           D H++ ++I G C  G + +   +   M+     P  VIY +++ G CK+G    A +LF
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLF 501

Query: 313 IEMGSLGLVPNEVTYTVMINGYFKKGFKKEGLELYEEMKVRGVNPNMYTYNSVLNQYCKD 134
            EM    L PN  +Y  MI    K+   KE   L E+M   G++P+    +S+LN   + 
Sbjct: 502 REMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS----DSILNLISRA 557

Query: 133 GNVS 122
            N S
Sbjct: 558 KNDS 561