BLASTX nr result
ID: Coptis24_contig00030604
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00030604
(602 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 137 1e-30
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,... 135 7e-30
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 134 2e-29
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 134 2e-29
ref|XP_002871218.1| pentatricopeptide repeat-containing protein ... 125 4e-27
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 137 bits (345), Expect = 1e-30
Identities = 86/209 (41%), Positives = 117/209 (55%), Gaps = 23/209 (11%)
Frame = -3
Query: 558 KHQTSFHSKPSKLRRKEKNQDTQLK-KTQKETNEFASIFNKITEIIGTEH---SNDPDP- 394
K Q+ S SKL + +++ K +T+ E S+FN+I EI+G E +P
Sbjct: 25 KSQSCLLSSRSKLSKLHPSKNDHNKSQTESEDQSVGSLFNEIAEILGAETVTVGRNPAGF 84
Query: 393 ------------------NCSSTVCRNVKASXXXXXXXXXXXXXTHFANSLVIDVSPLVH 268
+C+ VC + T ++S DVSP+V
Sbjct: 85 SAFKGTQLSVGEITAEYRSCTQGVC-GIAEDNAREMVDLSVLEDTQTSHSGGNDVSPMVD 143
Query: 267 KITEIVRAENANISMEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRH 88
+IT+IVRA+ SMEE+LEK+GFVFD+E+VEKVLKRCFKV ALRFF W+K+ G H
Sbjct: 144 EITKIVRADIGTGSMEEKLEKSGFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCH 203
Query: 87 TRETYNTMIYIAGEAKEFNVIEELVEGME 1
T TYNTM+YIAGEAKEF ++E+L+ ME
Sbjct: 204 TTRTYNTMLYIAGEAKEFGLVEKLIGEME 232
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = -3
Query: 225 MEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 46
+EE LEK F +++V ++L+ C G +AL FF W+ G+ HT ETYN I I+G
Sbjct: 650 IEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKISGC 709
Query: 45 AKEFNVIEEL 16
+K F + L
Sbjct: 710 SKNFRSMRNL 719
>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1072
Score = 135 bits (339), Expect = 7e-30
Identities = 92/225 (40%), Positives = 121/225 (53%), Gaps = 28/225 (12%)
Frame = -3
Query: 591 SSHSIPQKHFFKHQT---SFHSKPSKLRRKEKNQDTQLKKTQK--ETNEFASIFNKITEI 427
SS+ + HQ+ S SK SKL K+ +Q T+L+ + T S+F +ITEI
Sbjct: 14 SSYKLYSSQLSIHQSFCLSSFSKSSKLSHKQ-SQKTELQGQSEISTTVTINSLFKEITEI 72
Query: 426 IGTE-----------------HSNDPDPNC-----SSTVCRNVKASXXXXXXXXXXXXXT 313
+G + H + N + + +NV+ +
Sbjct: 73 LGADNFIPDKHPSGFLISKENHQKHDELNAELKTGTRGIYKNVEPNNVLREEEVFLGLDD 132
Query: 312 HFANSL-VIDVSPLVHKITEIVRAENANISMEERLEKAGFVFDAEIVEKVLKRCFKVGDS 136
L IDVSP+V +IT IVRAEN ++MEERLE GF F+ EIVEKVLKRCFKV
Sbjct: 133 TQIRDLNEIDVSPVVREITGIVRAENDLVAMEERLENLGFYFEPEIVEKVLKRCFKVPHL 192
Query: 135 ALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEFNVIEELVEGME 1
A RFF W+K GF HT +TY TM+YIAGEAKEF V+++LVE ME
Sbjct: 193 AFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEME 237
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = -3
Query: 267 KITEIVRAENANISMEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRH 88
+I +I+ + M+E LEK F +V ++L C G++AL+FF WL + G+ H
Sbjct: 658 EICKILSSSKDWCIMQEALEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWLGVQTGYCH 717
Query: 87 TRETYNTMIYIAGEAKEFNVIEEL 16
T+ETYN + I+G K+F + L
Sbjct: 718 TKETYNMAMKISGREKDFKHMRSL 741
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 134 bits (336), Expect = 2e-29
Identities = 85/202 (42%), Positives = 110/202 (54%), Gaps = 23/202 (11%)
Frame = -3
Query: 537 SKPSKLRRKEKNQDTQLKKTQKETNEFASIFNKITEIIGTE-----------------HS 409
SK SK +K Q+ QLK ET S+F +ITEI+G + H
Sbjct: 31 SKSSKPSHSKKTQEPQLKG-HAETKTINSLFKEITEILGADVVIPDRTPYGFFIPRETHV 89
Query: 408 NDPDPNCS-----STVCRNVKASXXXXXXXXXXXXXTHFANSL-VIDVSPLVHKITEIVR 247
D + + VC N + + +L DVS +VH+IT IVR
Sbjct: 90 GDNEISGEFKYREEGVCGNAELNNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVR 149
Query: 246 AENANISMEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNT 67
AEN SMEERL+K GF + EIVEKVLKRC+KV A RFF W+K + GF HT +TYNT
Sbjct: 150 AENCTASMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNT 209
Query: 66 MIYIAGEAKEFNVIEELVEGME 1
M+Y AGEA+EF+V++ L+E ME
Sbjct: 210 MLYTAGEAREFSVVDVLLEEME 231
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = -3
Query: 225 MEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 46
+++ LEK F E+V + L+ C G++AL FF W+ + GF T ETYN + ++G
Sbjct: 649 IQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGR 708
Query: 45 AKEFNVIEEL 16
K+F + L
Sbjct: 709 GKDFKHMRSL 718
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 134 bits (336), Expect = 2e-29
Identities = 85/202 (42%), Positives = 110/202 (54%), Gaps = 23/202 (11%)
Frame = -3
Query: 537 SKPSKLRRKEKNQDTQLKKTQKETNEFASIFNKITEIIGTE-----------------HS 409
SK SK +K Q+ QLK ET S+F +ITEI+G + H
Sbjct: 31 SKSSKPSHSKKTQEPQLKG-HAETKTINSLFKEITEILGADVVIPDRTPYGFFIPRETHV 89
Query: 408 NDPDPNCS-----STVCRNVKASXXXXXXXXXXXXXTHFANSL-VIDVSPLVHKITEIVR 247
D + + VC N + + +L DVS +VH+IT IVR
Sbjct: 90 GDNEISGEFKYREEGVCGNAELNNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVR 149
Query: 246 AENANISMEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNT 67
AEN SMEERL+K GF + EIVEKVLKRC+KV A RFF W+K + GF HT +TYNT
Sbjct: 150 AENCTASMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNT 209
Query: 66 MIYIAGEAKEFNVIEELVEGME 1
M+Y AGEA+EF+V++ L+E ME
Sbjct: 210 MLYTAGEAREFSVVDVLLEEME 231
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = -3
Query: 225 MEERLEKAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGE 46
+++ LEK F E+V + L+ C G++AL FF W+ + GF T ETYN + ++G
Sbjct: 649 IQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGR 708
Query: 45 AKEFNVIEEL 16
K+F + L
Sbjct: 709 GKDFKHMRSL 718
>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297317055|gb|EFH47477.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1029
Score = 125 bits (315), Expect = 4e-27
Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 12/188 (6%)
Frame = -3
Query: 528 SKLRRKEKNQDTQLKKTQKETNEFASIFNKITEIIG-----TEHSNDPDPNCSSTVCRNV 364
SK + K ++T K Q E S+FN+IT+I+G T+ + + S+ VC N
Sbjct: 28 SKSSKSNKTRETTPSKIQSEATAITSLFNEITDILGSDVVQTDETTRLRAHVSAPVCDNG 87
Query: 363 KASXXXXXXXXXXXXXTHFANSLV-------IDVSPLVHKITEIVRAENANISMEERLEK 205
N +D SP+VH+IT +VRA++ +SME+RLE
Sbjct: 88 ALVSCTQGVRENAAMGFSGENEEAQKGLLEKVDFSPVVHQITSVVRADDEIVSMEDRLEI 147
Query: 204 AGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEFNVI 25
F F+ EIVE VLKRCFKV A+RFF W+K + GF H YNTM+ IAGEA+ +++
Sbjct: 148 LSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAGEARNLDMV 207
Query: 24 EELVEGME 1
+ELV+ ME
Sbjct: 208 DELVKEME 215