BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030420
         (627 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             194   1e-47
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   191   9e-47
emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera]   189   5e-46
emb|CAN79085.1| hypothetical protein VITISV_027044 [Vitis vinifera]   187   1e-45
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                187   1e-45

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  194 bits (493), Expect = 1e-47
 Identities = 100/210 (47%), Positives = 135/210 (64%), Gaps = 2/210 (0%)
 Frame = +1

Query: 4    IIADNGTQFTGAKVAAFLKGYKVKQGFSAPYNPEGNGQAESSNKTIMNNLKRKLEDKKGA 183
            I+ DNG QF   +  AF   + +K  +S P  P+GNGQAE++NKTI++NLK++L   KG 
Sbjct: 881  IVTDNGPQFISHEFDAFCADWGIKVSYSTPRYPQGNGQAEAANKTILSNLKKRLNHLKGG 940

Query: 184  WADELNHVLWAYRTTPRGSTKETPFALAYGVEAVIPSEM-VAATGRTRA-VEEGTNWRIL 357
            W +EL  VLWAYRTTPR  T ETPF+L YG+EAV+P+E+ V    RT A + E  N  +L
Sbjct: 941  WYEELQPVLWAYRTTPRRPTGETPFSLVYGMEAVVPAELNVPGLRRTEAPLNEEENSAML 1000

Query: 358  AGDLNLVEETRDSARIRLEEYHRRLQRQYNKRVRPRRFRVGELVLRRVTPSTKEGKDGKL 537
               L+ + E RD A IR++ Y +   R YN +V+ R F VG+ VLRRV  + KE   GKL
Sbjct: 1001 NDSLDTINERRDQALIRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKL 1060

Query: 538  GLNWEGPYTVVEVGGAGTYKLQTSEGKRIE 627
            G+NWEGPY + EV   G Y+L+  E   ++
Sbjct: 1061 GINWEGPYIITEVVRNGVYRLKDLEDNPVK 1090


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  191 bits (485), Expect = 9e-47
 Identities = 97/209 (46%), Positives = 140/209 (66%), Gaps = 2/209 (0%)
 Frame = +1

Query: 4    IIADNGTQFTGAKVAAFLKGYKVKQGFSAPYNPEGNGQAESSNKTIMNNLKRKLEDKKGA 183
            I+ DNGTQFT  +   F   +K++   S P  P+ NGQAE++NKTI++ LK++L++KKGA
Sbjct: 1565 IVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGA 1624

Query: 184  WADELNHVLWAYRTTPRGSTKETPFALAYGVEAVIPSEM-VAATGRTRAVEEGT-NWRIL 357
            WADEL+ VLW+YRTTPR ST  TPF+L YG+EA+ P E  +    R+  + + T N ++L
Sbjct: 1625 WADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQML 1684

Query: 358  AGDLNLVEETRDSARIRLEEYHRRLQRQYNKRVRPRRFRVGELVLRRVTPSTKEGKDGKL 537
              +L+ +EE RD A +R++ Y +   + YNK+V+ R F  G+LVLR+V  +T E   GKL
Sbjct: 1685 LDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKL 1744

Query: 538  GLNWEGPYTVVEVGGAGTYKLQTSEGKRI 624
            G +WEGPY + +V   G Y+L T +G  I
Sbjct: 1745 GAHWEGPYLISKVVKPGVYELLTMDGTPI 1773


>emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera]
          Length = 1003

 Score =  189 bits (479), Expect = 5e-46
 Identities = 96/204 (47%), Positives = 127/204 (62%)
 Frame = +1

Query: 4    IIADNGTQFTGAKVAAFLKGYKVKQGFSAPYNPEGNGQAESSNKTIMNNLKRKLEDKKGA 183
            IIADNG QF       F     ++  +S P  P+ NGQAE++NKT++  LK++LE  KG 
Sbjct: 783  IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 842

Query: 184  WADELNHVLWAYRTTPRGSTKETPFALAYGVEAVIPSEMVAATGRTRAVEEGTNWRILAG 363
            W +EL  VLWAYRTTP   T  TPFALAYG++AVIP+E+   T RT A ++      L  
Sbjct: 843  WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPTEIGLPTIRTNAAKQSDANMELGR 902

Query: 364  DLNLVEETRDSARIRLEEYHRRLQRQYNKRVRPRRFRVGELVLRRVTPSTKEGKDGKLGL 543
            +L+  +E R+SA IR+ +Y +R    YN++VRPR F+ G LVLR+V  +T E   GK   
Sbjct: 903  NLDWTDEVRESAAIRMADYQQRASAHYNRKVRPRSFKNGTLVLRKVFKNTTEVGAGKFQA 962

Query: 544  NWEGPYTVVEVGGAGTYKLQTSEG 615
            NWEGPY V + G  G Y LQ  +G
Sbjct: 963  NWEGPYIVSKAGNNGAYHLQKLDG 986


>emb|CAN79085.1| hypothetical protein VITISV_027044 [Vitis vinifera]
          Length = 1000

 Score =  187 bits (476), Expect = 1e-45
 Identities = 96/204 (47%), Positives = 127/204 (62%)
 Frame = +1

Query: 4    IIADNGTQFTGAKVAAFLKGYKVKQGFSAPYNPEGNGQAESSNKTIMNNLKRKLEDKKGA 183
            IIADNG QF       F     ++  +S P  P+ NGQAE++NKT++N LK++LE  KG 
Sbjct: 780  IIADNGLQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLINALKKRLEQAKGK 839

Query: 184  WADELNHVLWAYRTTPRGSTKETPFALAYGVEAVIPSEMVAATGRTRAVEEGTNWRILAG 363
            W +EL  VLWAYRTTP   T  TPFALAYG++AVIP+E+   T RT A ++         
Sbjct: 840  WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPTEIGLPTIRTDAAKQSDANIEFRR 899

Query: 364  DLNLVEETRDSARIRLEEYHRRLQRQYNKRVRPRRFRVGELVLRRVTPSTKEGKDGKLGL 543
            +L+  +E R+SA IR+ +Y +R    YN++VRPR F+ G LVLR+V  +T E   GK   
Sbjct: 900  NLDWTDEVRESAAIRMADYQQRASAHYNRKVRPRSFKNGTLVLRKVFENTTEVGAGKFQA 959

Query: 544  NWEGPYTVVEVGGAGTYKLQTSEG 615
            NWEGPY V +  G G Y LQ  +G
Sbjct: 960  NWEGPYIVSKANGNGAYHLQKLDG 983


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  187 bits (475), Expect = 1e-45
 Identities = 90/205 (43%), Positives = 129/205 (62%)
 Frame = +1

Query: 4    IIADNGTQFTGAKVAAFLKGYKVKQGFSAPYNPEGNGQAESSNKTIMNNLKRKLEDKKGA 183
            +I+DNG QF       +     ++ G+S P  P+GN QAE++NK I+  LK+ L+D KG 
Sbjct: 886  LISDNGLQFDSKAFRRYCADIGIRNGYSTPAYPQGNSQAEATNKVILAGLKKHLDDAKGR 945

Query: 184  WADELNHVLWAYRTTPRGSTKETPFALAYGVEAVIPSEMVAATGRTRAVEEGTNWRILAG 363
            W +EL HVLWAYRTTPR ST ETPF++ YG+EAVIP E+   T +       TN  +L  
Sbjct: 946  WVEELPHVLWAYRTTPRRSTGETPFSMTYGMEAVIPLELGFPTLKFDQYNNVTNHDMLHD 1005

Query: 364  DLNLVEETRDSARIRLEEYHRRLQRQYNKRVRPRRFRVGELVLRRVTPSTKEGKDGKLGL 543
             LN +EE R+ A +++  Y ++L++ Y+K V+ R    G+LVLR+V  + +    GKLG 
Sbjct: 1006 SLNTIEERREVASVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGT 1065

Query: 544  NWEGPYTVVEVGGAGTYKLQTSEGK 618
            NWEGPY +  V G G Y+L+  +G+
Sbjct: 1066 NWEGPYRITSVAGIGAYRLEDLDGR 1090