BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030320
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   253   2e-65
emb|CBI40590.3| unnamed protein product [Vitis vinifera]              253   2e-65
ref|XP_002523296.1| pentatricopeptide repeat-containing protein,...   252   3e-65
ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|2...   237   7e-61
ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containi...   235   4e-60

>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  253 bits (645), Expect = 2e-65
 Identities = 122/179 (68%), Positives = 144/179 (80%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           MI GY RCGDL  A  LF LMP RNV SWTAMISGY+QN +Y  AL +++ ME E  ++P
Sbjct: 154 MIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRP 213

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           NEVT+ASVLPACANLGALE+GERIEV  R  G+ KNL+VSNALLEMYA+CGRIDKA  VF
Sbjct: 214 NEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF 273

Query: 361 KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGAL 537
           +EI   +NLCSWN+MIMGLAVHGR +  ++LF +ML  G +PDD+TFVGVLLACTHG +
Sbjct: 274 EEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGM 332



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 46/155 (29%), Positives = 80/155 (51%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           +I    +   +  A +LF+ +P+  V  +  +I  YS +  +     +Y +M   +G  P
Sbjct: 22  LIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQM-CLQGCSP 80

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           NE +   +  ACA+L + + G  +     + GF  ++F   AL++MYAK G +  A + F
Sbjct: 81  NEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQF 140

Query: 361 KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREM 465
            E+   +++ +WN+MI G A  G  E  L+LFR M
Sbjct: 141 DEMT-VRDVPTWNSMIAGYARCGDLEGALELFRLM 174



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
 Frame = +1

Query: 13  YTRCGDLAEARRLFELMP-RRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKPNEV 189
           Y RCG + +A  +FE +  RRN+ SW +MI G + + R ++A+E++ +M  E G  P++V
Sbjct: 260 YARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLRE-GAAPDDV 318

Query: 190 TIASVLPACANLGALEMGER-IEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKE 366
           T   VL AC + G +  G+   E + R+   A  L     ++++  + G + +A  +   
Sbjct: 319 TFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILR 378

Query: 367 IRHTKNLCSWNTMIMGLAVHGRWEAGLK 450
           +    +   W T++   + HG  E   K
Sbjct: 379 MPMEPDSVVWGTLLGACSFHGHVELAEK 406


>emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  253 bits (645), Expect = 2e-65
 Identities = 122/179 (68%), Positives = 144/179 (80%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           MI GY RCGDL  A  LF LMP RNV SWTAMISGY+QN +Y  AL +++ ME E  ++P
Sbjct: 154 MIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRP 213

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           NEVT+ASVLPACANLGALE+GERIEV  R  G+ KNL+VSNALLEMYA+CGRIDKA  VF
Sbjct: 214 NEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF 273

Query: 361 KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGAL 537
           +EI   +NLCSWN+MIMGLAVHGR +  ++LF +ML  G +PDD+TFVGVLLACTHG +
Sbjct: 274 EEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGM 332



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 46/155 (29%), Positives = 80/155 (51%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           +I    +   +  A +LF+ +P+  V  +  +I  YS +  +     +Y +M   +G  P
Sbjct: 22  LIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQM-CLQGCSP 80

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           NE +   +  ACA+L + + G  +     + GF  ++F   AL++MYAK G +  A + F
Sbjct: 81  NEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQF 140

Query: 361 KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREM 465
            E+   +++ +WN+MI G A  G  E  L+LFR M
Sbjct: 141 DEMT-VRDVPTWNSMIAGYARCGDLEGALELFRLM 174


>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 353

 Score =  252 bits (643), Expect = 3e-65
 Identities = 119/180 (66%), Positives = 147/180 (81%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           +I GY+RCGD+  A ++F+LMP RNVVSWTAMISGYSQN RY  ALE++++ME E G++P
Sbjct: 154 LIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRP 213

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           NEVTIAS+LPACANLGALE+G+RIE   RE G  +NL+VSNALLEMYA+CG+ID A +VF
Sbjct: 214 NEVTIASILPACANLGALEVGDRIETYARENGLLRNLYVSNALLEMYARCGKIDMARKVF 273

Query: 361 -KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGAL 537
            K I   +NLCSWN+MIMGLA+HGR    L L+  ML  GI+PDD+TFVG+LLACTHG +
Sbjct: 274 DKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIEGIAPDDVTFVGILLACTHGGM 333



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 32/198 (16%)
 Frame = +1

Query: 40  ARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKPNEVTIASVLPACA 219
           A +L +L+P  NV  +  +I  YS   +      IY +M + +    N+ T   +  ACA
Sbjct: 35  AHKLIDLIPSPNVFLYNKLIQAYSFQNQLHQCFSIYSQMRS-RNCTGNQHTFTFLFAACA 93

Query: 220 NLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEI---------- 369
           +  +    + +    ++ GF  ++    AL++MY K G +  A RVF EI          
Sbjct: 94  SFFSPLHAQMLHTHFKKSGFESDVIALTALVDMYCKLGMVAFAHRVFDEIPVRDIPTWNA 153

Query: 370 --------------------RHTKNLCSWNTMIMGLAVHGRWEAGLKLFREM-LTGGISP 486
                                  +N+ SW  MI G + +GR+   L+LF +M    G+ P
Sbjct: 154 LIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRP 213

Query: 487 DDITFVGVLLACTH-GAL 537
           +++T   +L AC + GAL
Sbjct: 214 NEVTIASILPACANLGAL 231


>ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|222843153|gb|EEE80700.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  237 bits (605), Expect = 7e-61
 Identities = 114/179 (63%), Positives = 139/179 (77%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           +I GY+R GD+  A  LF+LMP R+VVSWT MISGYSQN  Y  ALE++++ME +K V+P
Sbjct: 82  LIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRP 141

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           NEVTIASV  ACA LGALE+GERIE   R+ G  KNL+VSN LLEMYA+CG+ID A  VF
Sbjct: 142 NEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVF 201

Query: 361 KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGAL 537
            EI   +NLCSWN+M+MGLAVHGR    L+L+ +ML  GI PDD+TFVG++LACTHG L
Sbjct: 202 NEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGL 260



 Score = 65.5 bits (158), Expect = 5e-09
 Identities = 36/100 (36%), Positives = 59/100 (59%)
 Frame = +1

Query: 166 KGVKPNEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDK 345
           KG  PNE+T   + PACA+  +L  G+ I     + GF  +++   AL++MYAK G +  
Sbjct: 4   KGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLML 63

Query: 346 AMRVFKEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREM 465
           A +VF E+   +++ +WN++I G +  G  E  L+LF+ M
Sbjct: 64  ARQVFDEMT-VRDIPTWNSLIAGYSRSGDMEGALELFKLM 102


>ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  235 bits (599), Expect = 4e-60
 Identities = 112/179 (62%), Positives = 141/179 (78%)
 Frame = +1

Query: 1   MITGYTRCGDLAEARRLFELMPRRNVVSWTAMISGYSQNERYEDALEIYMRMEAEKGVKP 180
           M+ G+ R GD+  A  LF LMP RNVVSWT MISGYS++++Y +AL +++RME EKG+ P
Sbjct: 155 MMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMP 214

Query: 181 NEVTIASVLPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVF 360
           N VT+AS+ PA ANLGALE+G+R+E   R+ GF KNL+VSNA+LEMYAKCG+ID A +VF
Sbjct: 215 NAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVF 274

Query: 361 KEIRHTKNLCSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGAL 537
            EI   +NLCSWN+MIMGLAVHG     LKL+ +ML  G SPDD+TFVG+LLACTHG +
Sbjct: 275 NEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGM 333



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
 Frame = +1

Query: 28  DLAEARRLFELMPRRNVVSWTAMISGYSQNERYE-DALEIYMRMEAEKGVKPNEVTIASV 204
           +L  A ++    P+  +  +  +I  YS + +++     +Y +M     + PN+ T   +
Sbjct: 31  NLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFL-PNQHTFNFL 89

Query: 205 LPACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKN 384
             AC +L +  +G+ +     + GF  +LF + ALL+MY K G ++ A ++F ++   + 
Sbjct: 90  FSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQM-PVRG 148

Query: 385 LCSWNTMIMGLAVHGRWEAGLKLFREM 465
           + +WN M+ G A  G  +  L+LFR M
Sbjct: 149 VPTWNAMMAGHARFGDMDVALELFRLM 175