BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029981
         (444 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indi...    69   4e-10
gb|EEC83784.1| hypothetical protein OsI_29682 [Oryza sativa Indi...    68   9e-10
ref|XP_002468277.1| hypothetical protein SORBIDRAFT_01g042855 [S...    67   2e-09
ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein A...    66   3e-09
gb|ABN07997.1| contains similarity to reverse trancriptase , rel...    65   8e-09

>gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indica Group]
          Length = 961

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
 Frame = +2

Query: 2    NGVYIDIWKDSWIPGLPIGKVPAHTTHNPLYKCVSDLINHHSKTWNIHLLNQLFDPNTSI 181
            +G  + IW+D+WIP     KV    T + L K VSDL+    + WN  L+  +F P  + 
Sbjct: 668  DGSKVKIWRDNWIPREHNLKVIGRKTRSRL-KWVSDLLLPDRQQWNEELVRNMFYPPDAE 726

Query: 182  SIQQIYLPRSRSDDKVQWLLTKKGVHLVKSMYQ-----HLSSKNLQITASKTN--QTFWQ 340
             I +I LP S  +D V W   K G+  V+S Y+      L S N   ++S  N  +T W+
Sbjct: 727  GILRIQLPHSPGEDIVAWHYDKSGIFTVRSAYKVALDALLRSDNTGESSSAPNGERTLWK 786

Query: 341  NNHN----PRATLFAWKCYYDMVPTR 406
            N  N     +  +FAW+   D + T+
Sbjct: 787  NIWNTQVPQKVRIFAWRLARDCLATQ 812


>gb|EEC83784.1| hypothetical protein OsI_29682 [Oryza sativa Indica Group]
          Length = 666

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
 Frame = +2

Query: 2   NGVYIDIWKDSWIPGLPIGKVPAHTTHNPLYKCVSDLINHHSKTWNIHLLNQLFDPNTSI 181
           NG  + IW+D WIP     KV        + K V+DL++ ++  WN  L+ Q+F P  + 
Sbjct: 282 NGTRVRIWRDPWIPRSSTRKVITSQGRCRI-KWVADLLDANTN-WNEQLVRQIFLPMDAD 339

Query: 182 SIQQIYLPRSRSDDKVQWLLTKKGVHLVKSMYQ-----HLSSKNLQITASKTN------Q 328
           +I  I   R   DD + W L K G+  VK+ Y+      L+SKN   + S          
Sbjct: 340 AILSIRTSRQGEDDFLAWHLEKSGIFTVKTAYRLAIENKLNSKNSNASGSSIEGSKSLWN 399

Query: 329 TFWQNNHNPRATLFAWKCYYDMVPTR 406
           T W     P+  +FAW+   D + TR
Sbjct: 400 TIWSCPVPPKVRIFAWRVASDCLATR 425


>ref|XP_002468277.1| hypothetical protein SORBIDRAFT_01g042855 [Sorghum bicolor]
           gi|241922131|gb|EER95275.1| hypothetical protein
           SORBIDRAFT_01g042855 [Sorghum bicolor]
          Length = 575

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
 Frame = +2

Query: 20  IWKDSWIPGLPIGKVPAH----TTHNPLYKCVSDLINHHSKTWNIHLLNQLFDPNTSISI 187
           IW   W P     K+  H     T+ PL    SDL + +SK WN+ LLN  FD   +  I
Sbjct: 398 IWSTPWCPVWE--KIHDHLLLPVTNTPLPAIASDLWHPNSKNWNVQLLNTTFDAQAAHQI 455

Query: 188 QQIYLPRSRSDDKVQWLLTKKGVHLVKSMYQHLSSKN-LQITAS-------KTNQTF--- 334
             I+   + ++D ++W   K G+   K +Y+HLSS N +Q+ +        +TNQ     
Sbjct: 456 ASIHPVPANNNDILRWKPAKNGICSTKEIYKHLSSLNTIQLPSQGSRSILPQTNQILKRT 515

Query: 335 WQNNH-NPRATLFAWKCYYDMVPTRDHLAK 421
           W+++H  P    F W+     + T D  A+
Sbjct: 516 WKSSHLPPIIKTFTWRLIRRALATADRAAR 545


>ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein At1g65750-like
           [Brachypodium distachyon]
          Length = 776

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
 Frame = +2

Query: 2   NGVYIDIWKDSWIPGLPIGKVPAH-TTHNPLYKCVSDLINHHSKTWNIHLLNQLFDPNTS 178
           NG  +DIW+ +W   LP G +    T  N   + VSDL+     TWN  L++Q+F P+ +
Sbjct: 124 NGRSVDIWRHNW---LPRGNLQVSGTAGNTRLRRVSDLMLPGLHTWNEELIHQIFYPHDA 180

Query: 179 ISIQQIYLPRSRSDDKVQWLLTKKGVHLVKSMY----------QHLSSKNLQITASKTNQ 328
            +I QI LP    DD V W   K G   VKS Y          Q  SS N      K   
Sbjct: 181 DAILQITLPNYDVDDVVAWQPEKLGFFSVKSAYRLALDASSGEQSGSSSNSPQGDRKIWD 240

Query: 329 TFWQNNHNPRATLFAWK 379
             W+    P+  +F WK
Sbjct: 241 VIWKAAVPPKVRIFGWK 257


>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
           truncatula]
          Length = 407

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
 Frame = +2

Query: 2   NGVYIDIWKDSWIPGLPIGKVPAHTTHNPLYKCVSDLINHHSKTWNIHLLNQLFDPNTSI 181
           +G  I+IW+D+W+P     KV      N     V DLIN+    WN  +L   F      
Sbjct: 208 DGGSINIWEDNWVPTYKGLKVMTTKGPNHFVNRVKDLINNQESLWNKVILEDQFISINID 267

Query: 182 SIQQIYLPRSRSDDKVQWLLTKKGVHLVKSMYQHL---SSKNLQITASKTNQT-----FW 337
            I  I L  + + D + W+    G++ VKS Y  L    ++ +  T++ +++T      W
Sbjct: 268 QISHIPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIW 327

Query: 338 QNNHNPRATLFAWKCYYDMVPTRDHLAK 421
             +  PR  +  W+   D +P R  L K
Sbjct: 328 SLHTIPRHKVLLWRILNDSLPVRSSLRK 355