BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029952
         (377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11
ref|XP_002517091.1| pentatricopeptide repeat-containing protein,...    56   3e-06

>ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 27/135 (20%)
 Frame = +3

Query: 51  TPSLKLTIYPLHLKMS------HFKQIQAVIIRTCLIPHT-------------------- 152
           +P+  +  +P+ L M         KQIQA + +T LI HT                    
Sbjct: 43  SPTNTIITHPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINH 102

Query: 153 TNLLSITSQN-NLYIYNTIVKHYSKSKQSKVSIFLFREMVRKHLEMNKQTFVFTIKACEL 329
            +LL    QN N YI+NT+++ YSK+K  +     F +MV+K +EM+ ++FVF +KACE 
Sbjct: 103 AHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQ 162

Query: 330 FKGGVIVNEEIHCIV 374
           F  GV+  + +HC+V
Sbjct: 163 FL-GVLEGKSVHCVV 176


>ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543726|gb|EEF45254.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 606

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 21/115 (18%)
 Frame = +3

Query: 93  MSHFKQIQAVIIRTCLIPHTTNLLSITS---------------------QNNLYIYNTIV 209
           M   KQIQA +I T LI HT  +  + +                       N YI+NT++
Sbjct: 171 MIQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMI 230

Query: 210 KHYSKSKQSKVSIFLFREMVRKHLEMNKQTFVFTIKACELFKGGVIVNEEIHCIV 374
           + +S +K   + +  F +MVR+ +EM+ ++FVF +KA E F    +  E IHC +
Sbjct: 231 RGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFL-TALEGESIHCAI 284