BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029945
         (1254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    96   3e-17
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    92   2e-16
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    91   6e-16
ref|XP_003594083.1| F-box/kelch-repeat protein [Medicago truncat...    91   8e-16
ref|XP_002516806.1| conserved hypothetical protein [Ricinus comm...    90   1e-15

>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 95.5 bits (236), Expect = 3e-17
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 21/250 (8%)
 Frame = +1

Query: 1   NGIVCLVK-SNDVCLLNPYTREYKIVNFE----HQFNFN-------LEHTYGLGYDPTSD 144
           NG++C+   ++D+   NP  R+++I+  E     + N N         H YG GYD  +D
Sbjct: 93  NGLLCICNIADDIAFWNPTIRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATD 152

Query: 145 DFKLVHF----DCSPESI-SQVSVYSLNDASCVNVSNVPYQILELKESGVVFLNGALHWI 309
           D+KLV      D    S  S V +Y++       + ++PY +   +  GV F++GALHW+
Sbjct: 153 DYKLVSISYFVDLHNRSFDSHVKIYTMRTDVWKTLPSMPYALCCARTMGV-FVSGALHWV 211

Query: 310 ARRT--SEGCEILISFNIEEKIIREFSRPVGVNEFAFMSVXXXXXXXXXXXKTYDTDIDI 483
             R    E  +++++F++  ++ RE + P  V+    M V                  D+
Sbjct: 212 VTRDLEPESRDLIVAFDLRFEVFREVALPGTVDGKFDMDVALLRGMLCIIENRGSDGFDV 271

Query: 484 WVLKNYSLSDSWVKLFTIGETIMISVKNSWPTSVGYNEPNPRPLCFCKNGEVLL--RDSD 657
           WV++ Y   DSW K+FT+G+   + +  S            +PL + +NG+ +L  +DS 
Sbjct: 272 WVMREYGSHDSWCKMFTVGQPRDVKLMKSL-----------KPLGYSRNGDKVLFEQDSK 320

Query: 658 RIVVYDPKDK 687
           ++  Y+   K
Sbjct: 321 KLCWYNLASK 330


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 24/285 (8%)
 Frame = +1

Query: 1   NGIVCLVKS---NDVCLLNPYTREYKIVNFEHQFNFNLEHTYGLGYDPTSDDFKLV---- 159
           NG++CL  S   + V + NP+TR++K +    Q+  + E  +G GY P ++ +K+V    
Sbjct: 129 NGLLCLADSLFKDAVYVHNPFTRDFKQLPKSLQYP-DQEVVFGFGYHPMTEVYKVVKVVY 187

Query: 160 ---------HFDCSPESISQVSVYSLNDASCVNVSNVPYQILELKESGVVFLNGALHWIA 312
                     F     S S+V V +L   +  ++  V YQ+       +V  NG LHW+ 
Sbjct: 188 YRNGYGGFSRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSEALV--NGRLHWVT 245

Query: 313 RRTSEGCEILISFNIEEKIIREFSRPV--GVNEFAFMSVXXXXXXXXXXXKTYDTDIDIW 486
           R        ++SF++ ++  RE  +P   G++   +  +           ++ +  +++W
Sbjct: 246 RPRRYVTRFIVSFDLADEQFREIPKPDCGGLSRCNYHLLVLGGCLSAAVHRS-NGKLEVW 304

Query: 487 VLKNYSLSDSWVKLFTIGETIMISVKN--SWPTSVGYNEPNPRP---LCFCKNGEVLLRD 651
           V+K Y + +SW+K F IG  +   +K   + P  +  N P  R    LC  KNGE+LL  
Sbjct: 305 VMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLKNGEILLEY 364

Query: 652 SDRIVV-YDPKDKTSRDLKVHFISHCSRMAIMIHFASLVPLNSGT 783
             R++V Y+P+    +DL +  + +       +H  SL  ++S T
Sbjct: 365 KGRVLVSYNPERGKFKDLTLKGLPNW--FQTFVHVGSLSWIDSNT 407


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 90.9 bits (224), Expect = 6e-16
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 25/259 (9%)
 Frame = +1

Query: 1   NGIVCLVKS---NDVCLLNPYTREYKIVNFEHQFNFNLEHTYGLGYDPTSDDFKLVHF-- 165
           NG++CL  S   + + + NP+T  YK +    Q+  + E  +G G++P ++++K++    
Sbjct: 128 NGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYP-DQEVVFGFGFNPKTNEYKVIRIVY 186

Query: 166 -----DCSPES------ISQVSVYSLNDASCVNVSNVPYQILELKESGVVFLNGALHWIA 312
                   P S      +SQV + +L      ++  V Y+++  + +    +NG LHW++
Sbjct: 187 YRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLV--RRASETLVNGRLHWVS 244

Query: 313 RRT-SEGCEILISFNIEEKIIREFSRPV--GVNEFAFMSVXXXXXXXXXXXKTYDTDIDI 483
           R   ++    L+SF++ ++  RE  +P   G+N   +                Y   ++I
Sbjct: 245 RPCRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVYCNYGR-LEI 303

Query: 484 WVLKNYSLSDSWVKLFTIGETIMISVKNSW--PTSVGYNEPN---PRPLCFCKNGEVLLR 648
           WV+K Y++ +SWVK + IG  +   +K +   P  +  N  N    R LC  KNGE+LL 
Sbjct: 304 WVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEILLE 363

Query: 649 DSDR-IVVYDPKDKTSRDL 702
             +R +V YDPK    +D+
Sbjct: 364 YKNRALVSYDPKKGKFKDI 382


>ref|XP_003594083.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355483131|gb|AES64334.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 366

 Score = 90.5 bits (223), Expect = 8e-16
 Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 16/248 (6%)
 Frame = +1

Query: 1   NGIVCL-VKSNDVCLLNPYTR-EYKIVNFEHQFNFNLEHTYGLGYDPTSDDFKLVHFDCS 174
           NG++C  +K + V L NP  R   K     + +       +GLGYD  +DD+K+V   C 
Sbjct: 112 NGLLCFAIKGDCVLLWNPSIRVSKKSPPLGNNWRPGCFTCFGLGYDHVNDDYKVVAVFCD 171

Query: 175 PE---SISQVSVYSLNDASCVNVSNVPYQILELKESGVVFLNGALHWIARRT--SEGCEI 339
           P    S S+V VYS+   +   + + P+ +   + S   F++G L+W +  +  S     
Sbjct: 172 PNEFFSESKVKVYSMATNTWRKIHDFPHGVSPYQNSSGKFVSGTLNWASNYSIGSSSFWT 231

Query: 340 LISFNIEEKIIREFSRPVGVNEFAFMSVXXXXXXXXXXXKTYD---TDIDIWVLKNYSLS 510
           ++S ++E++  RE   P    E    S              YD   TD  +W++K+Y + 
Sbjct: 232 IVSLDLEKETYREVLPPDYEKEEC--STPSLSVLKGCLCMNYDYKKTDFVVWLMKDYGVR 289

Query: 511 DSWVKLFTIGETIMISVKNSWPTSVGYNEPNPR------PLCFCKNGEVLLRDSDRIVVY 672
           +SW+KL TI                    PNP       P C  +NGEVLL     +++Y
Sbjct: 290 ESWIKLLTIPYL-----------------PNPEDFSYSGPYCISENGEVLLMFEFDLILY 332

Query: 673 DPKDKTSR 696
           DP+D + R
Sbjct: 333 DPRDHSFR 340


>ref|XP_002516806.1| conserved hypothetical protein [Ricinus communis]
           gi|223543894|gb|EEF45420.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 403

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 4/243 (1%)
 Frame = +1

Query: 1   NGIVCLVKSND-VCLLNPYTREYKIVNFEHQFNFNLEHTYGLGYDPTSDDFKLVHFDCSP 177
           NG++C+    D + L NP TRE K +  E     N    +G GYD T DD+K+V  +   
Sbjct: 162 NGLLCIAPDEDSLFLFNPSTRESKKILEES----NYVTAFGFGYDSTRDDYKVVRINAGV 217

Query: 178 ESISQVSVYSLNDASCVNVSNVPYQILELKESGVVFLNGALHWIARRTSEGCE---ILIS 348
            S    SVYSL   S   + N  +       SGV FL GA+HW+A    E  +   ++ +
Sbjct: 218 AS----SVYSLRTDSWRKIDNFCHDFC-FHHSGV-FLRGAIHWMAINREEVDDEYYVISA 271

Query: 349 FNIEEKIIREFSRPVGVNEFAFMSVXXXXXXXXXXXKTYDTDIDIWVLKNYSLSDSWVKL 528
           F++E+++  +   P   ++ +   +              +   D WV+  Y + +SW +L
Sbjct: 272 FDMEKELFWDMPAPDMEDDDSEFMLGTLNEDLCVLKSFNEMHNDFWVMHEYGVGESWTRL 331

Query: 529 FTIGETIMISVKNSWPTSVGYNEPNPRPLCFCKNGEVLLRDSDRIVVYDPKDKTSRDLKV 708
                TI +S                +PLC  KNGE LL    R+V Y+ ++ T ++L V
Sbjct: 332 -----TISLSYICM------------KPLCLAKNGEALLDIDGRLVQYNLENNTYKELVV 374

Query: 709 HFI 717
           H I
Sbjct: 375 HGI 377