BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029899
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29194.3| unnamed protein product [Vitis vinifera]              106   2e-21
ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_003612489.1| Pentatricopeptide repeat-containing protein ...    99   4e-19
gb|AFW84010.1| hypothetical protein ZEAMMB73_045792 [Zea mays]         97   2e-18

>emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  106 bits (265), Expect = 2e-21
 Identities = 48/82 (58%), Positives = 63/82 (76%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLVF 218
           DS+   NV+SACG+L+ L AG SLHG  +KT +E D+RV+N+LITMY RC ++E+AR++F
Sbjct: 500 DSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIF 559

Query: 219 NASSFRNLYSWNCMISGLAQNK 284
             S  RNL SWNCMIS  +QNK
Sbjct: 560 GFSCNRNLCSWNCMISAFSQNK 581



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/81 (40%), Positives = 49/81 (60%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLVF 218
           DS T + VVSA   +  L+ GR LHG + KT +  D  + N+LI MY++C ++ S+  VF
Sbjct: 113 DSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVF 172

Query: 219 NASSFRNLYSWNCMISGLAQN 281
               +R++ SWN M+ G A N
Sbjct: 173 GGMEYRDIISWNSMMRGCAYN 193



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = +3

Query: 36  PDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESA 206
           PDS+T V ++  C +L  L  GR++HG T++  + LD  V NSLI MYS+CKDV+ A
Sbjct: 317 PDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRA 373



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVR---VRNSLITMYSRCKDVESAR 209
           D+++    VSA   L  LS G+ +HG+ IK   + D+      NSLI++YS+C+D+++A 
Sbjct: 214 DNVSLTCAVSASALLGELSFGQVIHGWGIKLGYK-DISHNSFENSLISLYSQCRDIQAAE 272

Query: 210 LVFNASSFRNLYSWNCMISGLAQNK 284
           ++F    ++++ SWN M+ GLA N+
Sbjct: 273 ILFKEMKYKDIVSWNAMLDGLALNQ 297



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/86 (33%), Positives = 50/86 (58%)
 Frame = +3

Query: 9   QICCSSYTSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRC 188
           ++ C     P+ IT V ++SAC  L  L  G+ +HG  I++ ++ +  V  +L  MYS C
Sbjct: 588 ELFCHIEFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNC 647

Query: 189 KDVESARLVFNASSFRNLYSWNCMIS 266
             +++A  +F +S  R++ +WN MIS
Sbjct: 648 GRLDTAFQIFQSSPERSVAAWNSMIS 673


>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  106 bits (265), Expect = 2e-21
 Identities = 48/82 (58%), Positives = 63/82 (76%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLVF 218
           DS+   NV+SACG+L+ L AG SLHG  +KT +E D+RV+N+LITMY RC ++E+AR++F
Sbjct: 481 DSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIF 540

Query: 219 NASSFRNLYSWNCMISGLAQNK 284
             S  RNL SWNCMIS  +QNK
Sbjct: 541 GFSCNRNLCSWNCMISAFSQNK 562



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 42/82 (51%), Positives = 55/82 (67%)
 Frame = +3

Query: 36  PDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLV 215
           PDS+T V ++  C +L  L  GR++HG T++  + LD  V NSLI MYS+CKDV+ A  V
Sbjct: 276 PDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHV 335

Query: 216 FNASSFRNLYSWNCMISGLAQN 281
           F A   R+L SWN MISG +QN
Sbjct: 336 FKAIPERDLVSWNAMISGYSQN 357



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/81 (40%), Positives = 49/81 (60%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLVF 218
           DS T + VVSA   +  L+ GR LHG + KT +  D  + N+LI MY++C ++ S+  VF
Sbjct: 72  DSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVF 131

Query: 219 NASSFRNLYSWNCMISGLAQN 281
               +R++ SWN M+ G A N
Sbjct: 132 GGMEYRDIISWNSMMRGCAYN 152



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVR---VRNSLITMYSRCKDVESAR 209
           D+++    VSA   L  LS G+ +HG+ IK   + D+      NSLI++YS+C+D+++A 
Sbjct: 173 DNVSLTCAVSASALLGELSFGQVIHGWGIKLGYK-DISHNSFENSLISLYSQCRDIQAAE 231

Query: 210 LVFNASSFRNLYSWNCMISGLAQNK 284
           ++F    ++++ SWN M+ GLA N+
Sbjct: 232 ILFKEMKYKDIVSWNAMLDGLALNQ 256



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/86 (33%), Positives = 50/86 (58%)
 Frame = +3

Query: 9   QICCSSYTSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRC 188
           ++ C     P+ IT V ++SAC  L  L  G+ +HG  I++ ++ +  V  +L  MYS C
Sbjct: 569 ELFCHIEFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNC 628

Query: 189 KDVESARLVFNASSFRNLYSWNCMIS 266
             +++A  +F +S  R++ +WN MIS
Sbjct: 629 GRLDTAFQIFQSSPERSVAAWNSMIS 654


>ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Glycine max]
          Length = 944

 Score =  102 bits (254), Expect = 3e-20
 Identities = 46/82 (56%), Positives = 62/82 (75%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLVF 218
           DSIT V+ +SAC +L+  + G+SLHG T+K+P+  D RV+NSLITMY RC+D+ SA++VF
Sbjct: 601 DSITLVSALSACANLELFNLGKSLHGLTVKSPLGSDTRVQNSLITMYDRCRDINSAKVVF 660

Query: 219 NASSFRNLYSWNCMISGLAQNK 284
              S  NL SWNCMIS L+ N+
Sbjct: 661 KFFSTPNLCSWNCMISALSHNR 682



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +3

Query: 27  YTSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELD-VRVRNSLITMYSRCKDVES 203
           +  PD +T + ++  C +L     GR++HG+ I+  +  D V + NSLI MYS+C  VE 
Sbjct: 390 FFQPDIVTLITLLPLCAELMLSREGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEK 449

Query: 204 ARLVFNASSFRNLYSWNCMISGLAQNK 284
           A L+FN+++ ++  SWN MISG + N+
Sbjct: 450 AELLFNSTAEKDTVSWNAMISGYSHNR 476



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/86 (37%), Positives = 53/86 (61%)
 Frame = +3

Query: 24  SYTSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVES 203
           S  + D+++    +SA   L  LS G+S+HG  IK   +  V V NSLI++YS+C+D+++
Sbjct: 287 SEETADNVSLCCAISASSSLGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKA 346

Query: 204 ARLVFNASSFRNLYSWNCMISGLAQN 281
           A  +F   + +++ SWN M+ G A N
Sbjct: 347 AETLFREIALKDIVSWNAMMEGFASN 372



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 25/85 (29%), Positives = 50/85 (58%)
 Frame = +3

Query: 30  TSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESAR 209
           T  DS T + +VSA   ++    GR++H  +IK+ + +D+ + N+L+ MY++C D+ S+ 
Sbjct: 188 TGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSE 247

Query: 210 LVFNASSFRNLYSWNCMISGLAQNK 284
            ++     ++  SWN ++ G   N+
Sbjct: 248 CLYEEIECKDAVSWNSIMRGSLYNR 272


>ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513824|gb|AES95447.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 955

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/82 (56%), Positives = 59/82 (71%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLVF 218
           DSIT VNV+SA  +++ L+ G+SLH   +K+P   D RV+NSLITMY RC+D+ SAR VF
Sbjct: 609 DSITLVNVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSARKVF 668

Query: 219 NASSFRNLYSWNCMISGLAQNK 284
              S  NL +WNCMIS L+ NK
Sbjct: 669 KFHSISNLCTWNCMISALSHNK 690



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
 Frame = +3

Query: 36  PDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELD-VRVRNSLITMYSRCKDVESARL 212
           PD +T   ++  C +L     GR++HG+ I+  +  D + +RN LI MYS+C  VE A L
Sbjct: 403 PDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAEL 462

Query: 213 VFNASSFRNLYSWNCMISGLAQNK 284
           +F++++  +L SWN MISG +QNK
Sbjct: 463 LFHSTAQIDLVSWNAMISGYSQNK 486



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
 Frame = +3

Query: 39  DSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELD--VRVRNSLITMYSRCKDVESARL 212
           D ++    +SAC  L  L+ G  +HG  IK   + +  V V NSLI++YS+C+ V+ A  
Sbjct: 300 DHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAET 359

Query: 213 VFNASSFRNLYSWNCMISGLAQNK 284
           VF   +++++ SWN M+ G A N+
Sbjct: 360 VFREMAYKDIVSWNAMMEGYASNE 383



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
 Frame = +3

Query: 3   FNQICCSSYTSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYS 182
           F Q      T  DS T + VVS    L+    GR +H  +IK+ + +D+ + N+LI MY+
Sbjct: 185 FFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMYA 244

Query: 183 RCKDVES--ARLVFNASSFRNLYSWNCMISGLAQN 281
           +C DV S  +  +F    ++++ SWN ++ G   N
Sbjct: 245 KCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYN 279


>gb|AFW84010.1| hypothetical protein ZEAMMB73_045792 [Zea mays]
          Length = 917

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 49/93 (52%), Positives = 62/93 (66%)
 Frame = +3

Query: 3   FNQICCSSYTSPDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYS 182
           F  + CS   +PDSIT V+V+SACGDL  L+ G+S+H   +K     ++RV+NSL+TMY 
Sbjct: 561 FRFMYCSLAINPDSITIVSVLSACGDLNLLALGKSIHCMILKHLFASNLRVKNSLLTMYF 620

Query: 183 RCKDVESARLVFNASSFRNLYSWNCMISGLAQN 281
           R  D  SA LVF +    NL SWNCMISG AQN
Sbjct: 621 RFGDTRSAELVFYSMGDTNLCSWNCMISGFAQN 653



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
 Frame = +3

Query: 3   FNQICCSSYTSPDSITFVNVVSACGDLQFL-SAGRSLHGFTIKTPVE--LDVRVRNSLIT 173
           F ++ CS +  PD ++  +V+SAC  L  L S G S+H   +K   E      V NSL+T
Sbjct: 252 FREMSCSIF-QPDEVSLSSVLSACSRLDDLFSFGESVHSCAVKLGYEDTASCSVANSLVT 310

Query: 174 MYSRCKDVESARLVFNASSFRNLYSWNCMISGLAQNK 284
            YS     E+A+ VF ++  RNL SWN MI GL QN+
Sbjct: 311 FYSEFGMPEAAKKVFASNLNRNLVSWNAMIKGLVQNE 347



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +3

Query: 36  PDSITFVNVVSACGDLQFLSAGRSLHGFTI-KTPVELDVRVRNSLITMYSRCKDVESARL 212
           PD  T V +VS C D   LS G +LHG+ I K  +  +  + NSL+ +Y +C +  +A L
Sbjct: 365 PDVATLVTIVSGCADQGLLSEGETLHGYVIRKGLLREEPSMGNSLLDLYLKCDEPSNAGL 424

Query: 213 VFNASSFRNLYSWNCMISGLAQ 278
           +F     R+L SWN MISG ++
Sbjct: 425 LFMTMPRRDLISWNTMISGYSR 446



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/77 (32%), Positives = 45/77 (58%)
 Frame = +3

Query: 36  PDSITFVNVVSACGDLQFLSAGRSLHGFTIKTPVELDVRVRNSLITMYSRCKDVESARLV 215
           P+ I+ V ++ AC  L     G+S+HG   ++ +  +V +  SL+ MY +C  ++ A  V
Sbjct: 671 PNEISVVGIICACTQLGGYRQGKSIHGHVFRSVLHNNVFISASLVDMYCKCGRLDIAVRV 730

Query: 216 FNASSFRNLYSWNCMIS 266
           F AS+ +++  WN +IS
Sbjct: 731 FEASAEKSIAGWNSLIS 747