BLASTX nr result

ID: Coptis24_contig00029462 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029462
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpg|DAA36955.1| TPA: disease resistance analog PIC17 [Zea mays]        62   6e-08
ref|XP_002448181.1| hypothetical protein SORBIDRAFT_06g022540 [S...    55   8e-06

>tpg|DAA36955.1| TPA: disease resistance analog PIC17 [Zea mays]
          Length = 923

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
 Frame = +1

Query: 4   RPDPGFMVKDGLCLTSIPHNSEW-DGKIVSLVRNEIKTLVPINSNCYNLKTMLLQNNP-I 177
           + D  F+V+ G+ L S P   EW +   +S++ N+IK L P +  C NL T+L+QNNP +
Sbjct: 490 KTDQKFLVQAGMALDSAPPAEEWKESTRISIMSNDIKEL-PFSPECENLTTLLIQNNPNL 548

Query: 178 SYTTSGFSIYPVPALQILDISYIEIKELP 264
           +  +SGF  + +P+L++LD+S+  I  LP
Sbjct: 549 NKLSSGFFKF-MPSLKVLDLSHTAITTLP 576


>ref|XP_002448181.1| hypothetical protein SORBIDRAFT_06g022540 [Sorghum bicolor]
           gi|241939364|gb|EES12509.1| hypothetical protein
           SORBIDRAFT_06g022540 [Sorghum bicolor]
          Length = 911

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
 Frame = +1

Query: 19  FMVKDGLCLTSIPHNSEW-DGKIVSLVRNEIKTLVPINSNCYNLKTMLLQNNP-ISYTTS 192
           F+V+ G+ L S P   EW +   +S++ N+IK L+  +  C  L T+L+QNNP ++  +S
Sbjct: 490 FLVQAGMALDSAPPAEEWKEATRISIMSNDIKELL-FSPECEILTTLLIQNNPNLNKLSS 548

Query: 193 GFSIYPVPALQILDISYIEIKELP 264
           GF  + +P+L++LD+S+  I  LP
Sbjct: 549 GFFKF-MPSLKVLDLSHTAITSLP 571


Top