BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029435
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]    58   7e-18
ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi...    58   7e-18
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi...    57   9e-15
ref|NP_201359.1| pentatricopeptide repeat-containing protein [Ar...    50   2e-11
ref|XP_002866679.1| pentatricopeptide repeat-containing protein ...    50   2e-11

>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 58.2 bits (139), Expect(2) = 7e-18
 Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 12/65 (18%)
 Frame = +3

Query: 3   KNQSLQKL----TPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNLLIRA 146
           K+ SL+KL    TP HVS LF  N+DP+ AL+FFN        +H+V SY S+LN+LIRA
Sbjct: 55  KHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRA 114

Query: 147 RFLYV 161
           R L V
Sbjct: 115 RLLGV 119



 Score = 57.0 bits (136), Expect(2) = 7e-18
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +1

Query: 184 SVEDCNYVLTELRKLTSR-ECGFKFTLKCYNYLLMSLARVLLIDDMKQVYLEML 342
           S+ED  +VL   RK+ +  E  FK TL+CYN +LMSL++ LLID+MK VYLE+L
Sbjct: 133 SIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186


>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
           protein product [Vitis vinifera]
          Length = 890

 Score = 58.2 bits (139), Expect(2) = 7e-18
 Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 12/65 (18%)
 Frame = +3

Query: 3   KNQSLQKL----TPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNLLIRA 146
           K+ SL+KL    TP HVS LF  N+DP+ AL+FFN        +H+V SY S+LN+LIRA
Sbjct: 55  KHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRA 114

Query: 147 RFLYV 161
           R L V
Sbjct: 115 RLLGV 119



 Score = 57.0 bits (136), Expect(2) = 7e-18
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +1

Query: 184 SVEDCNYVLTELRKLTSR-ECGFKFTLKCYNYLLMSLARVLLIDDMKQVYLEML 342
           S+ED  +VL   RK+ +  E  FK TL+CYN +LMSL++ LLID+MK VYLE+L
Sbjct: 133 SIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186


>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
           gi|449522905|ref|XP_004168466.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 57.0 bits (136), Expect(2) = 9e-15
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
 Frame = +1

Query: 184 SVEDCNYVLTELRKLTSRECGFKF--TLKCYNYLLMSLARVLLIDDMKQVYLEML 342
           S E+  +VL  LR +  R   FKF  TL+CYN LLM L+R L+ID+MK VYLEML
Sbjct: 142 SSENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEML 196



 Score = 47.8 bits (112), Expect(2) = 9e-15
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
 Frame = +3

Query: 15  LQKLTPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNLLIRARFLYV 161
           +  + P H+S LF LN+DP+ AL FFN        +H+V+S++S+LN+L+   +L +
Sbjct: 72  IPSIAPSHISALFALNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRI 128


>ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|110737310|dbj|BAF00601.1| hypothetical protein
           [Arabidopsis thaliana] gi|332010688|gb|AED98071.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 915

 Score = 50.4 bits (119), Expect(2) = 2e-11
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
 Frame = +1

Query: 184 SVEDCNYVLTELRKLTSRE---CGFKFTLKCYNYLLMSLARVLLIDDMKQVYLEML 342
           SV D  YVL   RK+   E     +K  + CYN LL SLAR  L+D+MKQVY+EML
Sbjct: 155 SVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEML 210



 Score = 43.1 bits (100), Expect(2) = 2e-11
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
 Frame = +3

Query: 24  LTPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNLLIRARFLYV 161
           ++P HVS LF+L++DPK AL F +        +H V SY SLL LLI   ++ V
Sbjct: 88  ISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGV 141


>ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312514|gb|EFH42938.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 915

 Score = 50.1 bits (118), Expect(2) = 2e-11
 Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
 Frame = +1

Query: 184 SVEDCNYVLTELRKLT---SRECGFKFTLKCYNYLLMSLARVLLIDDMKQVYLEML 342
           SV D  +VL   RK+    S E  +K  + CYN LL SLAR  L+D+MKQVY+EML
Sbjct: 155 SVADTLFVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEML 210



 Score = 43.1 bits (100), Expect(2) = 2e-11
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
 Frame = +3

Query: 24  LTPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNLLIRARFLYV 161
           ++P HVS LF+L++DPK AL F +        +H V SY SLL LLI   ++ V
Sbjct: 88  ISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGV 141