BLASTX nr result
ID: Coptis24_contig00029424
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00029424
(348 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002864185.1| pentatricopeptide repeat-containing protein ... 161 5e-38
ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis... 160 8e-38
ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 158 5e-37
ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat... 158 5e-37
ref|XP_003625160.1| Pentatricopeptide repeat-containing protein ... 151 6e-35
>ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297310020|gb|EFH40444.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 588
Score = 161 bits (408), Expect = 5e-38
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +1
Query: 1 HLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRP 180
+LIN YSK Q P DSR+ FED P KS T+WSSIIS FAQNELP +SLEF R+M+ +RP
Sbjct: 55 NLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRP 114
Query: 181 DDHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
DDH+ PSATKSC IL R ++GKS H LS K G D DVFVGSS+VDMYAKCGEI A
Sbjct: 115 DDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYA 170
Score = 68.2 bits (165), Expect = 7e-10
Identities = 33/112 (29%), Positives = 63/112 (56%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
L+++Y+KC +R++F+++P ++ +WS ++ +AQ +L F+ L + +
Sbjct: 157 LVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVN 216
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEI 339
D+ F + CA +E+G+ L K D FVGSS+V +Y+KCG++
Sbjct: 217 DYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDL 268
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/115 (28%), Positives = 64/115 (55%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
L++LYSKC + Q+F++VP ++ W++++ AQ+ +E F+RM G++P+
Sbjct: 258 LVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPN 317
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
F + +C+ V+ GK + L K+ ++ +S+VDM + G++ EA
Sbjct: 318 FITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEA 372
>ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g52630 gi|8953718|dbj|BAA98081.1|
selenium-binding protein-like [Arabidopsis thaliana]
gi|332008860|gb|AED96243.1| mitochondrial RNA editing
factor 1 [Arabidopsis thaliana]
Length = 588
Score = 160 bits (406), Expect = 8e-38
Identities = 78/116 (67%), Positives = 91/116 (78%)
Frame = +1
Query: 1 HLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRP 180
+LIN YSK Q P DSR+ FED P KS T+WSSIIS FAQNELP +SLEF ++M+ +RP
Sbjct: 55 NLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRP 114
Query: 181 DDHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
DDH+ PSATKSCAIL R ++G+S H LS K G D DVFVGSS+VDMYAKCGEI A
Sbjct: 115 DDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYA 170
Score = 71.6 bits (174), Expect = 6e-11
Identities = 36/110 (32%), Positives = 63/110 (57%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
L+++Y+KC +R++F+++P ++ +WS ++ +AQ +L F+ L + +
Sbjct: 157 LVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVN 216
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCG 333
D+ F S CA +E+G+ H LS K D FVGSS+V +Y+KCG
Sbjct: 217 DYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCG 266
Score = 62.0 bits (149), Expect = 5e-08
Identities = 33/115 (28%), Positives = 63/115 (54%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
L++LYSKC P + Q+F +VP K+ W++++ +AQ+ +E F+RM G++P+
Sbjct: 258 LVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPN 317
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
F + +C+ V+ G+ + K+ ++ +S+VDM + G + EA
Sbjct: 318 FITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEA 372
>ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 158 bits (399), Expect = 5e-37
Identities = 77/116 (66%), Positives = 92/116 (79%)
Frame = +1
Query: 1 HLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRP 180
+LINLYSK Q P S Q+F++ P KS T+WSS+IS FAQNE PLL+L+FFRRML G+RP
Sbjct: 65 NLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRP 124
Query: 181 DDHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
DDHI+PSATK+C L R +VGKS H L+ K G DVFVGSS+VDMYAKCGEI +A
Sbjct: 125 DDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180
Score = 80.1 bits (196), Expect = 2e-13
Identities = 38/112 (33%), Positives = 67/112 (59%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
L+++Y+KC D+R +F+++P ++ SWS +I +AQ + + +L F++ L + +
Sbjct: 167 LVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVN 226
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEI 339
D F S + C+ +E+GK H L KM D FVGS+++ +Y+KCG I
Sbjct: 227 DFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVI 278
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
LI+LYSKC + Q+F+++P ++ W+S++ AQ+ F M G++P+
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
F S +C+ VE G+ + +L + G++ + +S+VD+ + G++ EA
Sbjct: 328 FIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEA 382
>ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 158 bits (399), Expect = 5e-37
Identities = 77/116 (66%), Positives = 92/116 (79%)
Frame = +1
Query: 1 HLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRP 180
+LINLYSK Q P S Q+F++ P KS T+WSS+IS FAQNE PLL+L+FFRRML G+RP
Sbjct: 65 NLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRP 124
Query: 181 DDHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
DDHI+PSATK+C L R +VGKS H L+ K G DVFVGSS+VDMYAKCGEI +A
Sbjct: 125 DDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180
Score = 80.1 bits (196), Expect = 2e-13
Identities = 38/112 (33%), Positives = 67/112 (59%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
L+++Y+KC D+R +F+++P ++ SWS +I +AQ + + +L F++ L + +
Sbjct: 167 LVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVN 226
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEI 339
D F S + C+ +E+GK H L KM D FVGS+++ +Y+KCG I
Sbjct: 227 DFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVI 278
Score = 58.2 bits (139), Expect = 7e-07
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPD 183
LI+LYSKC + Q+F+++P ++ W+S++ AQ+ F M G++P+
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327
Query: 184 DHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
F S +C+ VE G+ + +L + G++ + +S+VD+ + G++ EA
Sbjct: 328 FISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEA 382
>ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360204|gb|ABN08217.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355500175|gb|AES81378.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 596
Score = 151 bits (381), Expect = 6e-35
Identities = 71/113 (62%), Positives = 84/113 (74%)
Frame = +1
Query: 1 HLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRP 180
HLIN YSK P+ S QIF D P KS T+WSS+IS+FAQN+LPLLSL +FR ML G+ P
Sbjct: 60 HLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPP 119
Query: 181 DDHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEI 339
DDHIFPSATKSC IL + V K H + K LD+FVGSS++DMYAKCG+I
Sbjct: 120 DDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDI 172
Score = 66.2 bits (160), Expect = 3e-09
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Frame = +1
Query: 4 LINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLEFFRRML--EYGIR 177
+I++Y+KC + +F+++P+++ SWS +I + Q SL F+R L E
Sbjct: 162 VIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEG 221
Query: 178 PDDHIFPSATKSCAILYRVEVGKSFHALSKKMGLDLDVFVGSSIVDMYAKCGEIFEA 348
+D S + C +++G+ H LS K D FV SS++ +Y+KCG + EA
Sbjct: 222 VNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEA 278