BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029414
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...   204   8e-51
ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containi...   120   9e-26
ref|NP_001057146.1| Os06g0216400 [Oryza sativa Japonica Group] g...   117   7e-25
gb|EEC80230.1| hypothetical protein OsI_22164 [Oryza sativa Indi...   117   7e-25

>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  204 bits (518), Expect = 8e-51
 Identities = 92/135 (68%), Positives = 114/135 (84%)
 Frame = +3

Query: 3   FVMLLRVCALSNEKIMGESFHCQIIKMGFEFDLVLQTGLLNFYSKVGNLEFAKRVFVEMP 182
           F ++LR CA+S E  +GE+FHCQI+KMGFE+D++LQTGLL+FY+KVG+L+ AKRVF+ MP
Sbjct: 13  FSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMP 72

Query: 183 ERDAVTHNVMISALGKHGFVSDAKKLFDEMPGKNSFSWNSMISCYCKLGDINAARSTFDC 362
            RD V +N MISAL KHG+V +A+ LFD M  +NS SWNSMI+CYCKLGDIN+AR  FDC
Sbjct: 73  RRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDC 132

Query: 363 NPVKDVVSWNTMIDG 407
           NPVKDVVSWN +IDG
Sbjct: 133 NPVKDVVSWNAIIDG 147


>ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  121 bits (304), Expect = 5e-26
 Identities = 59/133 (44%), Positives = 85/133 (63%)
 Frame = +3

Query: 3   FVMLLRVCALSNEKIMGESFHCQIIKMGFEFDLVLQTGLLNFYSKVGNLEFAKRVFVEMP 182
           F  L++ C       +G+  HC I K GFE  L +QT L++FYSK+  L  A++VF EM 
Sbjct: 238 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 297

Query: 183 ERDAVTHNVMISALGKHGFVSDAKKLFDEMPGKNSFSWNSMISCYCKLGDINAARSTFDC 362
           ERDA     M+SAL + G +  A+KLF+EMP +N+ +WN+MI  Y +LG++ +A   F+ 
Sbjct: 298 ERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQ 357

Query: 363 NPVKDVVSWNTMI 401
            P KD++SW TMI
Sbjct: 358 MPTKDIISWTTMI 370


>ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  120 bits (302), Expect = 9e-26
 Identities = 59/133 (44%), Positives = 85/133 (63%)
 Frame = +3

Query: 3   FVMLLRVCALSNEKIMGESFHCQIIKMGFEFDLVLQTGLLNFYSKVGNLEFAKRVFVEMP 182
           F  L++ C       +G+  HC I K GFE  L +QT L++FYSK+  L  A++VF EM 
Sbjct: 141 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 200

Query: 183 ERDAVTHNVMISALGKHGFVSDAKKLFDEMPGKNSFSWNSMISCYCKLGDINAARSTFDC 362
           ERDA     M+SAL + G +  A+KLF+EMP +N+ +WN+MI  Y +LG++ +A   F+ 
Sbjct: 201 ERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQ 260

Query: 363 NPVKDVVSWNTMI 401
            P KD++SW TMI
Sbjct: 261 MPTKDIISWTTMI 273


>ref|NP_001057146.1| Os06g0216400 [Oryza sativa Japonica Group]
           gi|51090406|dbj|BAD35328.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|51091140|dbj|BAD35836.1| pentatricopeptide
           (PPR) repeat-containing protein-like [Oryza sativa
           Japonica Group] gi|113595186|dbj|BAF19060.1|
           Os06g0216400 [Oryza sativa Japonica Group]
           gi|215715231|dbj|BAG94982.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222635200|gb|EEE65332.1| hypothetical protein
           OsJ_20596 [Oryza sativa Japonica Group]
          Length = 474

 Score =  117 bits (294), Expect = 7e-25
 Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
 Frame = +3

Query: 12  LLRVCALSNEKIMGESFHCQIIKMGFEFDLVLQTGLLNFYSKVGNLEFAKRVFVEMPERD 191
           L+R  A +  +   ++ HC   K+G   D VL T LL  Y++ G L+ A+R+F EMP RD
Sbjct: 13  LIRAVADAPGRREEQALHCLACKLGLAGDAVLATALLTRYARRGLLDPARRLFDEMPRRD 72

Query: 192 AVTHNVMISALGKHGFVSDAKKLFDEMPGKNSFSWNSMISCYCKLGDINAARSTFDCN-- 365
           AV  N M++AL     ++DA++LF+ MP +   SWN+M++CYCK GD+ +AR  F+ +  
Sbjct: 73  AVAFNAMLAALVASRRMADARELFERMPDRTPASWNTMVTCYCKAGDLGSAREVFEASLG 132

Query: 366 -PVKDVVSWNTMIDG 407
               +VVSWNTMIDG
Sbjct: 133 ATASNVVSWNTMIDG 147


>gb|EEC80230.1| hypothetical protein OsI_22164 [Oryza sativa Indica Group]
          Length = 457

 Score =  117 bits (294), Expect = 7e-25
 Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
 Frame = +3

Query: 12  LLRVCALSNEKIMGESFHCQIIKMGFEFDLVLQTGLLNFYSKVGNLEFAKRVFVEMPERD 191
           L+R  A +  +   ++ HC   K+G   D VL T LL  Y++ G L+ A+R+F EMP RD
Sbjct: 13  LIRAVADAPGRREEQALHCLACKLGLAGDAVLATALLTRYARRGLLDPARRLFDEMPRRD 72

Query: 192 AVTHNVMISALGKHGFVSDAKKLFDEMPGKNSFSWNSMISCYCKLGDINAARSTFDCN-- 365
           AV  N M++AL     ++DA++LF+ MP +   SWN+M++CYCK GD+ +AR  F+ +  
Sbjct: 73  AVAFNAMLAALVASRRMADARELFERMPDRTPASWNTMVTCYCKAGDLGSAREVFEASLG 132

Query: 366 -PVKDVVSWNTMIDG 407
               +VVSWNTMIDG
Sbjct: 133 ATASNVVSWNTMIDG 147